CB417426

Overview
NameCB417426
Unique NameCB417426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417426 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.139e-25
Identity = 65/120 (54.17%), Postives = 89/120 (74.17%), Query Frame = 2
Query:    5 SLSRSLKTRF-SLSKNDVAYILSLASLHVPILYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSHKLPSN---LRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPA 352
            SL+ SL+ RF SL+  +VA+ILS +SL +P+LY +L+S+GVV+SPANP+ S SEVSHQ+++S+P IAFATS T  KL S+   L T+LMDS EF+S LN++ D +      + V QSDPA
Sbjct:   89 SLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEFLSWLNRS-DSSSVNPFQVQVNQSDPA 207          
BLAST of CB417426 vs. ExPASy Swiss-Prot
Match: 4CLL7_ORYSJ (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.599e-19
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 2
Query:    5 SLSRSLKTRFSLSKNDVAYILSLASLHVPILYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSHKLPSNLRT-ILMDSPEFISLL 286
            +L+ +L++R  L   DVA++L+ A L VP+LYF+LLS+G V+SPANP  + +EVS  + LS  S+AFA S T+ KLP+ L T +L+DSP F SLL
Sbjct:   90 ALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFALLSIGAVVSPANPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDSPHFRSLL 184          
BLAST of CB417426 vs. ExPASy Swiss-Prot
Match: 4CLL5_ORYSJ (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 44/116 (37.93%), Postives = 71/116 (61.21%), Query Frame = 2
Query:    5 SLSRSLKTRFSLSKNDVAYILSLASLHVPILYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSHKLPSNLRTILMDSPEFISLLNQNEDVADFANSNMTVYQSDPA 352
            SL+  L     L   DVA +++ + L VP+L F+L+S+G V+SPANP+S+  E +HQ+ LS+P +AFA    + KLP ++R +++ S E+   L  ++     A + + V QSD A
Sbjct:   85 SLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFALMSIGAVVSPANPVSTPEEYAHQVALSRPVVAFAAPEVAAKLPEHVRCVVIGSDEY-GRLAASDGRRAAAPAAVAVKQSDTA 199          
BLAST of CB417426 vs. ExPASy Swiss-Prot
Match: 4CLL6_ORYSJ (4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.323e-14
Identity = 36/89 (40.45%), Postives = 58/89 (65.17%), Query Frame = 2
Query:    8 LSRSLKTRFSLSKNDVAYILSLASLHVPILYFSLLSLGVVISPANPLSSTSEVSHQIQLSKPSIAFATSHTSHKLPSNLRTILMDSPEF 274
            L+  L     L   DVA ++S + L V +LYF+L+S+GVV+SPANP S+  E +HQ++LS+P+IAF     + +LP ++  +++ S  F
Sbjct:  113 LAGGLWCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVVVSPANPASTADEYAHQVRLSRPAIAFVAPEVAARLPRHVSRVVIGSEVF 201          
The following BLAST results are available for this feature:
BLAST of CB417426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
4CLL9_ARATH4.139e-2554.174-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
4CLL7_ORYSJ2.599e-1951.584-coumarate--CoA ligase-like 7 OS=Oryza sativa sub... [more]
4CLL5_ORYSJ2.973e-1537.934-coumarate--CoA ligase-like 5 OS=Oryza sativa sub... [more]
4CLL6_ORYSJ7.323e-1440.454-coumarate--CoA ligase-like 6 OS=Oryza sativa sub... [more]
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Properties
Property NameValue
Genbank descriptionEST0528 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P343 similar to 4-coumarate-CoA ligase-like protein (acc# NP_201143), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417426 ID=CB417426; Name=CB417426; organism=Citrus sinensis; type=EST; length=353bp
TCACTCTCTCTCACGCTCTCTCAAAACGCGATTCTCTTTGTCGAAAAACG
ACGTCGCTTACATCCTCTCCCTTGCCTCCCTCCACGTCCCCATCCTCTAC
TTCTCTCTGTTATCACTCGGCGTCGTAATCTCCCCCGCCAACCCGCTCAG
CTCCACCTCAGAAGTGTCTCACCAAATCCAGCTCAGCAAACCTTCCATCG
CCTTTGCCACGTCACACACTTCGCACAAACTCCCGTCCAATCTTCGCACA
ATCCTCATGGACTCGCCTGAGTTCATCTCCTTATTAAACCAAAACGAGGA
CGTCGCTGACTTCGCGAATTCTAATATGACCGTTTACCAGTCCGACCCTG
CGG
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