CB417427

Overview
NameCB417427
Unique NameCB417427
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417427 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 86/241 (35.68%), Postives = 131/241 (54.36%), Query Frame = 3
Query:    3 LECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKL--GKRYPEKMHRWANALTEAANLSGFDSDVIRPESKLVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYXXXXXXXXXXXXXXXADAVFNKISRHFEGSYFAQNVREAEETGGIKD------LQKELLSKLLN--DRNVWNIESQLNRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQ 695
            ++CK + G  V+PVF +VDPS +R+QTG FG  F +   GK   E+ H W  ALT+AAN+ G        E+  +  I+ ++LE+L  T      DLVG+E  I ++ESLLC    GV                A A++N+   +F  S F +NVRE+    G+ D      LQ+  LSKLL+  D  V ++ +   RL  +K LI+ DDV +  Q+++L +      + SR+++TT++KQ
Sbjct:   89 MKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLETCCGKT-EERQHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVLEKLNATPSRDFNDLVGMEAHIAKMESLLCLESQGVRIVGIWGPAGVGKTTIARALYNQYHENFNLSIFMENVRESYGEAGLDDYGLKLHLQQRFLSKLLDQKDLRVRHLGAIEERLKSQKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQ 328          
BLAST of CB417427 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 86/245 (35.10%), Postives = 132/245 (53.88%), Query Frame = 3
Query:    3 LECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYP---EKMHRWANALTEAANLSGFDSDVIRPESKLVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYXXXXXXXXXXXXXXXADAVFNKI------SRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDRNVWNIE-----SQLNRLARKKFLIVFDDVTH-PRQIESLIRRLDRLASGSRVIITTRDK 692
            +ECK  + Q VIP+F  VDPSHVR Q  +F   F +   +Y    E + RW  AL EAANL G   +  + ++  + +I ++I  +L +   SY +++VG++  +++IESLL  G  GV                A A+F+ +      S  F+G+ F ++++E +   G+  LQ  LLS+LL ++  +N E        +RL  KK LIV DD+ +    +E L   LD   +GSR+IITTRDK
Sbjct:   91 MECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKLCKISLSYLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKR--GMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDK 333          
BLAST of CB417427 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 56/237 (23.63%), Postives = 117/237 (49.37%), Query Frame = 3
Query:    3 LECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYPEKMHRWANALTEAANLSGFDSDVIRPESKLVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLCTGFAGVYXXXXXXXXXXXXXXXADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSKLLNDR----NVWNIESQL--NRLARKKFLIVFDDVTHPRQIESLIRRLDRLASGSRVIITTRDKQ 695
            LE +H   ++V P+F R+ P      +  +  ++ +      ++  +W  AL E   + G+     + ES+L++EI  + L+ L     +   +++G++ +++EI SLLC     V                A+ +F KIS  +E     +++ +  E  G   +++  LS++L        + +I++    +RL RK+ L++ DDV   R +++ +  L+    GSR+I+T+R+++
Sbjct:  732 LEHQHTEDRVVYPIFYRLSPYDFVCNSKNYERFYLQ------DEPKKWQAALKEITQMPGYTL-TDKSESELIDEIVRDALKVL---CSADKVNMIGMDMQVEEILSLLCIESLDVRSIGIWGTVGIGKTTIAEEIFRKISVQYETCVVLKDLHKEVEVKGHDAVRENFLSEVLEVEPHVIRISDIKTSFLRSRLQRKRILVILDDVNDYRDVDTFLGTLNYFGPGSRIIMTSRNRR 958          
The following BLAST results are available for this feature:
BLAST of CB417427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4117_ARATH2.746e-3035.68Putative disease resistance protein At4g11170 OS=A... [more]
TMVRN_NICGU6.763e-2935.10TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
WRK19_ARATH3.603e-1423.63Probable WRKY transcription factor 19 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionEST0529 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P344 similar to NBS-LRR resistance protein RAS5-1 (acc# AAN73010), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417427 ID=CB417427; Name=CB417427; organism=Citrus sinensis; type=EST; length=696bp
TCCTCGAATGCAAGCATGATTATGGACAGATTGTGATTCCAGTTTTCTGT
CGCGTTGATCCATCGCACGTGAGACGGCAAACTGGGACTTTTGGAGATTA
TTTTTCGAAGCTTGGAAAACGATATCCAGAGAAGATGCATAGATGGGCGA
ATGCTTTGACAGAAGCAGCCAACCTTTCTGGCTTTGATTCTGATGTTATT
AGGCCTGAATCTAAACTTGTTGAGGAAATTGCCAATGAAATTTTGGAGAG
GCTGGAGGAAACTTTTCAAAGTTATAACAAAGACTTGGTTGGAGTTGAAT
GGCGCATTAAAGAAATTGAGTCATTATTATGCACTGGGTTTGCGGGTGTT
TACATATTGGGGATTTGGGGCATCGGTGGTATAGGCAAGACAACAATCGC
TGATGCTGTTTTTAACAAAATCTCTAGACATTTTGAAGGTTCTTACTTTG
CGCAAAATGTTAGAGAAGCAGAAGAAACTGGCGGAATAAAGGACTTACAG
AAGGAACTTCTGTCCAAGTTATTGAATGATAGAAATGTGTGGAACATCGA
GTCTCAACTCAACAGACTTGCTCGCAAGAAGTTTCTAATTGTTTTTGATG
ATGTGACTCATCCAAGACAAATAGAATCATTAATTAGACGCCTTGATCGG
TTAGCTTCAGGGAGTCGAGTGATAATAACAACAAGGGATAAACAAG
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