CB417428

Overview
NameCB417428
Unique NameCB417428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1654 contig Csv1_Contig1654:414..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 6.830e-36
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAE+VVVTTKHNDDEQY+WESQAGGSFTVTRDV GEPLGR
Sbjct:   96 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYVWESQAGGSFTVTRDVDGEPLGR 170          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.782e-35
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAE+V+VTTKHNDDEQYIWESQAGGSFTVTRDV GE LGR
Sbjct:  101 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVDGEQLGR 175          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.288e-34
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEAL AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQY+WESQAGGSFTVTRD SGE LGR
Sbjct:   97 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGR 171          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.288e-34
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEAL AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQY+WESQAGGSFTVTRD SGE LGR
Sbjct:   97 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGR 171          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.288e-34
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEAL AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQY+WESQAGGSFTVTRD SGE LGR
Sbjct:   97 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGR 171          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.288e-34
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEAL AGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQY+WESQAGGSFTVTRD SGE LGR
Sbjct:   97 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEQLGR 171          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.748e-34
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEAL AGADVSMIGQFGVGFYSAYLVAE+VVVTTKHNDDEQY+WESQAGGSFTVTRD SGE LGR
Sbjct:   96 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGENLGR 170          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 6.393e-34
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEAL AGADVSMIGQFGVGFYSAYLVA++VVVTTKHNDDEQY+WESQAGGSFTVTRD SGE LGR
Sbjct:   96 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVADKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGEALGR 170          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.393e-34
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEAL AGADVSMIGQFGVGFYSAYLVA++VVVTTKHNDDEQY+WESQAGGSFTVTRD SGE LGR
Sbjct:   96 TIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVADKVVVTTKHNDDEQYVWESQAGGSFTVTRDTSGETLGR 170          
BLAST of CB417428 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.333e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 1
Query:    1 TIARSGTKEFMEALQAGA-DVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGR 225
            TIARSGTKEFMEAL AGA DVSMIGQFGVGFYSAYLVA+RV+VTTKHNDDEQY+WESQAGGSFTVT D +GE LGR
Sbjct:  106 TIARSGTKEFMEALAAGATDVSMIGQFGVGFYSAYLVADRVMVTTKHNDDEQYVWESQAGGSFTVTHDTTGEQLGR 181          
The following BLAST results are available for this feature:
BLAST of CB417428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 131
Match NameE-valueIdentityDescription
HSP81_ARATH6.830e-3696.00Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]
HSP83_IPONI5.782e-3594.67Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP83_ORYSJ1.288e-3494.67Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ1.288e-3494.67Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSJ1.288e-3494.67Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI1.288e-3494.67Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP80_SOLLC3.748e-3493.33Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP83_ARATH6.393e-3492.00Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ARATH6.393e-3492.00Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP82_MAIZE1.333e-3188.16Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionEST0531 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P346 similar to heat shock protein 83 (acc# 1710352A), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417428 ID=CB417428; Name=CB417428; organism=Citrus sinensis; type=EST; length=227bp
ACAATTGCGAGATCCGGGACCAAGGAGTTTATGGAGGCTTTGCAGGCCGG
GGCTGATGTGTCAATGATTGGTCAATTTGGTGTTGGTTTCTATTCGGCTT
ACCTTGTTGCTGAGAGGGTTGTTGTGACTACAAAGCACAATGACGATGAG
CAATACATCTGGGAATCACAAGCTGGTGGTTCTTTCACTGTTACCAGGGA
TGTTAGTGGAGAGCCCCTTGGTAGAGG
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