CB417429
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2) HSP 1 Score: 226.868 bits (577), Expect = 8.917e-59 Identity = 98/146 (67.12%), Postives = 121/146 (82.88%), Query Frame = 1 Query: 1 PQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 438 PQD+T+HA+I+ +N WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+ YE+VQMLLSDRFLGF+MVP WNYNFMGV+H +MKY ++L P+E+YHE HRP+HFL F+ L+EGE+ DRED ++ Sbjct: 2190 PQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2) HSP 1 Score: 226.868 bits (577), Expect = 8.917e-59 Identity = 98/146 (67.12%), Postives = 121/146 (82.88%), Query Frame = 1 Query: 1 PQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 438 PQD+T+HA+I+ +N WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+ YE+VQMLLSDRFLGF+MVP WNYNFMGV+H +MKY ++L P+E+YHE HRP+HFL F+ L+EGE+ DRED ++ Sbjct: 2190 PQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 2.513e-53 Identity = 92/147 (62.59%), Postives = 113/147 (76.87%), Query Frame = 1 Query: 1 PQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEG-EMAEGDREDTFS 438 PQD+T+HA++L +N WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D G+NP GY+PT YEKVQMLLSDRFLG++MVP NG WNYNF G + + +MK+ V L P+EYYHEDHRP HF F ++ DRED F+ Sbjct: 2183 PQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.996e-42 Identity = 78/131 (59.54%), Postives = 99/131 (75.57%), Query Frame = 1 Query: 1 PQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNL 393 PQD+ +H++I+ +NK WDGEK +I++ S C+LTAY LTPSG+EWG+ NKD+ N GY P YEKVQMLLSDRFLGFYMVPD G WNYNFMGVKH+ +M YG+KL P+ +Y E HRP HF ++ + Sbjct: 2180 PQDVITHSKIMSDNKSWDGEKTVIISVSVA-WPCTLTAYHLTPSGFEWGKNNKDS-LNYQGYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQM 2308
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.531e-31 Identity = 64/145 (44.14%), Postives = 90/145 (62.07%), Query Frame = 1 Query: 7 DLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPH-GYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 438 D+T+HA+IL ++ +WD K + LT S+ PGS SL AY ++ G EWG N D S+ GY P+ EK Q+LLSDR GF++VP+ G WNYNF G + M Y +KL P ++ +HRPTH + ++ LE + E D D F+ Sbjct: 2220 DVTTHAKILSSHPEWD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELETNDRLEEDMPDAFA 2363
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_YEAST (Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae GN=PRP8 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25 Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 1 Query: 7 DLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSN-PHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 438 ++ +H+++ + K+ CI ++ TPGS SL+AY LT GY+WG NKD + G+ PT Q+LLSDR G +++P WNY FMG Y K G P E+Y+E HRP HFL+FS L E E ++ D FS Sbjct: 2273 EVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413 The following BLAST results are available for this feature:
BLAST of CB417429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB417429 ID=CB417429; Name=CB417429; organism=Citrus sinensis; type=EST; length=731bpback to top |