CB417429

Overview
NameCB417429
Unique NameCB417429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12266 contig Csv1_Contig12266:402..1132. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.917e-59
Identity = 98/146 (67.12%), Postives = 121/146 (82.88%), Query Frame = 1
Query:    1 PQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 438
            PQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+ YE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HRP+HFL F+ L+EGE+   DRED ++
Sbjct: 2190 PQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.917e-59
Identity = 98/146 (67.12%), Postives = 121/146 (82.88%), Query Frame = 1
Query:    1 PQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 438
            PQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+ YE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HRP+HFL F+ L+EGE+   DRED ++
Sbjct: 2190 PQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.513e-53
Identity = 92/147 (62.59%), Postives = 113/147 (76.87%), Query Frame = 1
Query:    1 PQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEG-EMAEGDREDTFS 438
            PQD+T+HA++L +N  WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D G+NP GY+PT YEKVQMLLSDRFLG++MVP NG WNYNF G + + +MK+ V L  P+EYYHEDHRP HF  F   ++       DRED F+
Sbjct: 2183 PQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329          
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.996e-42
Identity = 78/131 (59.54%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 PQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNL 393
            PQD+ +H++I+ +NK WDGEK +I++ S     C+LTAY LTPSG+EWG+ NKD+  N  GY P  YEKVQMLLSDRFLGFYMVPD G WNYNFMGVKH+ +M YG+KL  P+ +Y E HRP HF  ++ +
Sbjct: 2180 PQDVITHSKIMSDNKSWDGEKTVIISVSVA-WPCTLTAYHLTPSGFEWGKNNKDS-LNYQGYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQM 2308          
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.531e-31
Identity = 64/145 (44.14%), Postives = 90/145 (62.07%), Query Frame = 1
Query:    7 DLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPH-GYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 438
            D+T+HA+IL ++ +WD  K + LT S+ PGS SL AY ++  G EWG  N D  S+   GY P+  EK Q+LLSDR  GF++VP+ G WNYNF G   +  M Y +KL  P  ++  +HRPTH + ++ LE  +  E D  D F+
Sbjct: 2220 DVTTHAKILSSHPEWD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELETNDRLEEDMPDAFA 2363          
BLAST of CB417429 vs. ExPASy Swiss-Prot
Match: PRP8_YEAST (Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae GN=PRP8 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.300e-25
Identity = 59/145 (40.69%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    7 DLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSN-PHGYLPTRYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 438
            ++ +H+++  + K+     CI ++   TPGS SL+AY LT  GY+WG  NKD  +    G+ PT     Q+LLSDR  G +++P    WNY FMG        Y  K G P E+Y+E HRP HFL+FS L   E  E ++ D FS
Sbjct: 2273 EVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413          
The following BLAST results are available for this feature:
BLAST of CB417429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP8_MOUSE8.917e-5967.12Pre-mRNA-processing-splicing factor 8 OS=Mus muscu... [more]
PRP8_HUMAN8.917e-5967.12Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
PRP8_CAEEL2.513e-5362.59Pre-mRNA-splicing factor 8 homolog OS=Caenorhabdit... [more]
PRP8_DICDI1.996e-4259.54Pre-mRNA-processing-splicing factor 8 homolog OS=D... [more]
SPP42_SCHPO3.531e-3144.14Pre-mRNA-splicing factor spp42 OS=Schizosaccharomy... [more]
PRP8_YEAST1.300e-2540.69Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionEST0533 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P349 similar to RNA splicing factor (acc# BAA78744), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417429 ID=CB417429; Name=CB417429; organism=Citrus sinensis; type=EST; length=731bp
CCTCAGGATCTCACTTCTCATGCGCGGATTCTAGAAAACAATAAACAATG
GGATGGAGAGAAATGCATTATCTTGACTTGTAGTTTCACCCCAGGTTCCT
GCTCGTTAACTGCATACAAGCTTACTCCAAGTGGTTATGAGTGGGGAAGA
GTTAACAAGGACACAGGAAGCAATCCCCATGGATATCTTCCAACTCGCTA
TGAGAAGGTCCAAATGCTTCTGAGTGACCGGTTCCTTGGTTTCTACATGG
TTCCCGACAACGGTCCATGGAACTATAACTTCATGGGAGTGAAGCATACA
GTGAGCATGAAATATGGTGTCAAGCTTGGGACTCCTCGAGAATACTACCA
TGAGGACCATAGACCAACTCATTTCTTGGAGTTCAGCAACTTGGAGGAGG
GTGAAATGGCAGAGGGAGATCGTGAGGATACATTCTCATAAGCCTATTGA
TGCTATTTTGAGGTCGTAATCTTTCTTGTGAATTAAATTGTAGCATTTGC
TTGGAAACTGCTAGACTGGAGTAGATTTACTTTACCAACATGGGGATGAA
GCAGTGCCCCATTTTTGGTCGTTATAAAAACGTGTTTACTTATGGGACAG
TTGTAATTCTCTGTAGAATGATAGTTTGAGGTGTAAATATATACGGTAAC
GAGGTTTCATAAATTTTCTGTTGATGCTGGATCTGAAAGTCCTCTATGTG
GTATTAAGGAGTGGCCTTGCAGATTAATTTG
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