CB417430

Overview
NameCB417430
Unique NameCB417430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: Y4117_ARATH (Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.606e-26
Identity = 67/176 (38.07%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  225 DNFTSHLYSALCHNNIETFIDNDLKRGDEISQSLLDTXXXXXXXXXXXXXRYVSSGWCLDELSKILECKHDYGQIVIPVFCRVDPSHVRRQTGTFG-DYFSKLGKRYPEKMHRWANALTEAANLSGFDSDVIRPESKLVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLLC 749
            +NF SHL        I TF D+ +KR   I   L                 Y SS WCLDEL +I++CK + G  V+PVF +VDPS +R+QTG FG  +      +  E+ H W  ALT+AAN+ G        E+  +  I+ ++LE+L  T      DLVG+E  I ++ESLLC
Sbjct:   24 NNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLETCCGKTEERQHNWRRALTDAANILGDHPQNWDNEAYKITTISKDVLEKLNATPSRDFNDLVGMEAHIAKMESLLC 199          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.518e-24
Identity = 66/176 (37.50%), Postives = 96/176 (54.55%), Query Frame = 3
Query:  231 FTSHLYSALCHNNIETFIDND-LKRGDEISQSLLDTXXXXXXXXXXXXXRYVSSGWCLDELSKILECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGKRYP---EKMHRWANALTEAANLSGFDSDVIRPESKLVEEIANEILERLEETFQSYNKDLVGVEWRIKEIESLL 746
            FTSHLY  L    I+TF D+  L+ G  I   L                 Y +S WCL+EL KI+ECK  + Q VIP+F  VDPSHVR Q  +F   F +   +Y    E + RW  AL EAANL G   +  + ++  + +I ++I  +L +   SY +++VG++  +++IESLL
Sbjct:   27 FTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKGSCDNRDKTDADCIRQIVDQISSKLCKISLSYLQNIVGIDTHLEKIESLL 202          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.269e-19
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   51 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPDNFTSHLYSALCHNNIET 278
            VF+VDMPGLKSGDIKVQVE+DNVLLIS           AK++RMERRVGKFMRKF LP+N  +   SA+C + + T
Sbjct:   58 VFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLT 133          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.051e-18
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 3
Query:   51 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPDNFTSHLYSALCHNNI 272
            VF +DMPGLKSGDIKVQVEDDN+LLI            AKY+RMERRVGK MRKFVLP+N  +   SA+C + +
Sbjct:   62 VFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGV 135          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 3
Query:   51 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPDNFTSHLYSALCHNNIET 278
            VFIVDMPGLKSGDIKVQVE DNVL+IS            KYVRMERR+GKFM+KF LP++  +   SA+C + + T
Sbjct:   63 VFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLT 138          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.219e-17
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 3
Query:   51 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPDNFTSHLYSALCHNNIETFIDNDL 296
            VF+VDMPG+KSGDIKVQVED+NVLLIS            KY++MERR+GK MRKFVLP+N      SA+  + + T   N L
Sbjct:   55 VFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTVNKL 136          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.983e-16
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 3
Query:   51 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXX-AKYVRMERRVGKFMRKFVLPDNFTSHLYSALCHNNIET 278
            VFI+DMPGLKSGDIKVQV+ DNVL IS            AKYVRMERRVGK MRKFVLP+N      +A+C + + T
Sbjct:   57 VFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLT 133          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.418e-16
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:   54 FIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPDNFTSHLYSALCHNNIET 278
            F+VDMPGL +GDI+VQVED+ VL++S           AKY+RMERR+GKFMRKFVLPDN      +A+C + + T
Sbjct:   68 FVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLT 142          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.842e-16
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 3
Query:   54 FIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPDNFTSHLYSALCHNNIET 278
            F+VDMPGL +GDIKVQVED+ VL+IS           AKY+RMERR+GKFMRKFVLPDN      SA+C + + T
Sbjct:   66 FVVDMPGLGTGDIKVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLT 139          
BLAST of CB417430 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:   54 FIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPDNFTSHLYSALCHNNIET 278
            F+VDMPGL +GDI+VQVED+ VL+IS           AKY+RMERR+GKFMRKFVLPDN      +A+C + + T
Sbjct:   59 FVVDMPGLSTGDIRVQVEDERVLVISGERRREERED-AKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLT 132          
The following BLAST results are available for this feature:
BLAST of CB417430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
Y4117_ARATH3.606e-2638.07Putative disease resistance protein At4g11170 OS=A... [more]
TMVRN_NICGU7.518e-2437.50TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
HSP21_SOLPE4.269e-1961.8417.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_SOYBN8.051e-1860.8117.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_HELAN1.794e-1759.2117.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP21_PEA5.219e-1754.8817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI1.983e-1659.7417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_MAIZE4.418e-1654.6717.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_MAIZE9.842e-1658.6717.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP23_MAIZE3.740e-1556.0017.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionEST0534 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P350 similar to resistance gene (acc# CAC82811), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417430 ID=CB417430; Name=CB417430; organism=Citrus sinensis; type=EST; length=754bp
ACTTGGCATTTTCAAACCCATTTTTGCAGAGCTGATGGTCCTCAATGGAC
GTGTTCATCGTCGACATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCA
AGTGGAGGACGACAATGTGCTGCTCATAAGCGGAGAGAGGAAGCGGGAGG
AGGAGAAAGAGGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTCGGCAAG
TTTATGAGGAAATTTGTGCTGCCTGACAACTTTACCAGCCATCTTTATTC
TGCTCTGTGTCACAATAACATTGAAACTTTCATCGACAACGATCTTAAGA
GAGGAGATGAAATTTCACAGTCTCTGCTTGATACAATTGAAGCATCGGCC
ATCTCAATTATCATTTTCTCAGAAAGATATGTTTCTTCAGGATGGTGTCT
TGATGAACTTTCAAAGATCCTCGAATGCAAGCATGATTATGGACAGATTG
TGATTCCAGTTTTCTGTCGCGTTGATCCATCGCACGTGAGACGGCAAACT
GGGACTTTTGGAGATTATTTTTCGAAGCTTGGAAAACGATATCCAGAGAA
GATGCATAGATGGGCGAATGCTTTGACAGAAGCAGCCAACCTTTCTGGCT
TTGATTCTGATGTTATTAGGCCTGAATCTAAACTTGTTGAGGAAATTGCC
AATGAAATTTTGGAGAGGCTGGAGGAAACTTTTCAAAGTTATAACAAAGA
CTTGGTTGGAGTTGAATGGCGCATTAAAGAAATTGAGTCATTATTATGCA
CTGG
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