CB417432

Overview
NameCB417432
Unique NameCB417432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:7..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.213e-56
Identity = 105/114 (92.11%), Postives = 111/114 (97.37%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 343
            LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVAD+L+ARL
Sbjct:  297 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.975e-55
Identity = 106/115 (92.17%), Postives = 111/115 (96.52%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVADDLRARL 343
            LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVAD+L+ARL
Sbjct:  297 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.042e-54
Identity = 103/115 (89.57%), Postives = 112/115 (97.39%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 346
            LVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAACIG VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  298 LVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.169e-54
Identity = 101/115 (87.83%), Postives = 111/115 (96.52%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 346
            LVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA LLDFTEKLEAACIG VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  318 LVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.783e-38
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 346
            L+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  295 LICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.783e-38
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 346
            L+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  295 LICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.973e-37
Identity = 77/116 (66.38%), Postives = 91/116 (78.45%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 346
            L+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F   LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  295 LICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.973e-37
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 346
            L+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  295 LICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.671e-36
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 346
            LVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+ +L+
Sbjct:  295 LVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKLA 410          
BLAST of CB417432 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.349e-36
Identity = 74/112 (66.07%), Postives = 84/112 (75.00%), Query Frame = 2
Query:    2 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 331
            LVCPDGKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + LE  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct:  303 LVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 414          
The following BLAST results are available for this feature:
BLAST of CB417432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC7.213e-5692.11Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU7.975e-5592.17Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHC_SOYBN1.042e-5489.57Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MEDSA5.169e-5487.83Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_MICOH6.783e-3866.38Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME6.783e-3866.38Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_RAT1.973e-3766.38Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE1.973e-3766.38Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_SHEEP1.671e-3665.52Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHP_PIG6.349e-3666.07Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]

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Properties
Property NameValue
Genbank descriptionEST0536 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P352 similar to NADP-isocitrate dehydrogenase (acc# AAD51361), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417432 ID=CB417432; Name=CB417432; organism=Citrus sinensis; type=EST; length=638bp
ACTGGTATGCCCTGATGGGAAGACAATTGAAGCCGAAGCAGCCCATGGAA
CAGTTACCCGACACTACAGAGTTCATCAGAAAGGTGGTGAAACTAGCACA
AACAGCATAGCCTCCATCTTTGCTTGGTCACGAGGGCTTGCACATAGGGC
GAAGTTGGACAACAATGCTAGGCTATTGGATTTTACTGAGAAACTAGAAG
CTGCATGTATTGGCACTGTTGAATCTGGGAAGATGACCAAGGATCTTGCA
CTTATTATCCATGGATCTAAGATGACTAGGGAACACTATCTGAATACTGA
AGAGTTCATTGATGCTGTGGCCGACGATCTAAGAGCAAGACTCTCTGGCA
AAGCATGATTTTATGCTACACATTCAAAGGTAAAGACTTGGGGAAGCTTC
CTTTGGTTATCTTTTTCATATTATGCTGAGAAGAAATAATTGAAGAGGGG
AAAATTGGGGATTGGGATTTGGTTCTCTTCTAATTGCTACAATAGACTGC
TTTCCTGTTGATCGACAAACTCTCATTTTCATGCAAGCAAATGTCTTGAA
CATGGCTTGTTATAAACAAAACTATTGCTGCCAAATTTACGTTCATGGTT
TATTTGAGCTGCACCTCTGTTGCCAAAGTTTTAAGATG
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