CB417445

Overview
NameCB417445
Unique NameCB417445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length372
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8736 contig Csv1_Contig8736:47..409. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB417445 vs. ExPASy Swiss-Prot
Match: ARAE1_ARATH (UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:  145 MLNFGRARIQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSPPV 330
            M +FGRAR Q RQ R  S GGLDYADPK+K+N+ GK +L A+LTALCIF+LKQSPTF++P V
Sbjct:    1 MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTPSV 62
[Close]
BLAST of CB417445 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.132e-14
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  145 MLNFGRARIQQRQTRPTSFGGLDYADPKRKSNFAGKFILAAALTALCIFLLKQSPTFSSPPV 330
            MLN GRAR   RQ R  SF GLD+ADPK+ +N+ GK +L   LTA+CI LL QSPTF++P V
Sbjct:    1 MLNLGRARTG-RQNRSMSFEGLDFADPKKNNNYMGKIVLVMTLTAMCILLLNQSPTFNTPSV 61
The following BLAST results are available for this feature:
BLAST of CB417445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ARAE1_ARATH1.640e-1867.74UDP-arabinose 4-epimerase 1 OS=Arabidopsis thalian... [more]
ARAE2_ARATH7.132e-1459.68Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionEST0553 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P389 similar to UDP-gal-4-epimerase (acc# NP_174350), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417445 ID=CB417445; Name=CB417445; organism=Citrus sinensis; type=EST; length=372bp
ACGGCTTCTGTTTCTGTAAAGCAGAGAGGCTCTCTGTTATTTTTTTCTAT
CTCTGCTCACAAGGGGGTGTATTATACTTGATTTCTGACATAACTGAGGC
TTACAATTGATTGCAACATAGATAAACAATCAGAATCTGCCGAGATGCTG
AATTTTGGCAGGGCCAGAATTCAGCAAAGGCAGACTAGACCTACGTCCTT
TGGAGGTTTGGATTATGCAGACCCCAAAAGGAAGAGCAATTTTGCTGGAA
AATTTATTTTGGCTGCTGCTCTTACTGCATTGTGCATTTTCCTGCTGAAG
CAATCTCCAACTTTCAGTAGCCCACCCGTTACCAGGACATGAGTTACCCC
TTCTTCATGTTGGGAAAACGGG
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