CB610476
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.193e-43 Identity = 94/148 (63.51%), Postives = 106/148 (71.62%), Query Frame = 2 Query: 344 KAKRRSGSEFFDLEA-QVXXXXXXXXXXXXXXFIVDGGAELPDEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSAIALDHLKNYI 784 K K+ S S F D EA QV FIVD G +LPDE G R RR LPR++ EDVE LERRIQ R++ H EYDEE T+VEQQALLPSVRDPKLWMVKCAIGRERE AVCLMQK ID+G++LQIRS +ALDHLKN+I Sbjct: 81 KRKKPSASIFLDREAHQVDDEDEEEEDEAEDDFIVDNGTDLPDERGDRRYERR-FLPRDENDEDVEDLERRIQERFSSRHHEEYDEEATEVEQQALLPSVRDPKLWMVKCAIGREREVAVCLMQKFIDRGADLQIRSVVALDHLKNFI 227
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30 Identity = 81/170 (47.65%), Postives = 101/170 (59.41%), Query Frame = 2 Query: 335 RKPKAKRRSGSEFFDLEAQVXXXXXXXXXXXXXX--------------FIVDGGAELPDEDGGRGIHRRPLLPR--EDEQEDVEALERR----IQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDKGSELQIRSAIALDHLKNYI 784 R+ K+ SGS F D E +V FIV G A+LP+ED HRR R +EDV+ LE+R + +YA+ + E D+ DV+QQALLPSVRDPKLW+VKCAIGRERE AVCLMQK +D+GSE +IRSAIALDHL+NY+ Sbjct: 50 RRGSKKKSSGSAFIDWEVEVDDDVEDDDDDVDVEDGKQQLKFGDFSLCFIVSGEADLPNEDSD---HRRQYYQRGFHPHEEDVDELEKRTLERLSTKYAKDDY-ELDD-VNDVDQQALLPSVRDPKLWLVKCAIGREREVAVCLMQKIVDRGSEFKIRSAIALDHLQNYV 214
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_CHICK (Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.857e-12 Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2 Query: 467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784 DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LLP V+DP LW VKC IG ER A+ LM+K I + LQI+S +A +H+K YI Sbjct: 113 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYI 222
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_PONAB (Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12 Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2 Query: 467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784 DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LLP V+DP LW VKC IG ER A+ LM+K I + LQI+S +A +H+K YI Sbjct: 112 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYI 221
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_MOUSE (Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12 Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2 Query: 467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784 DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LLP V+DP LW VKC IG ER A+ LM+K I + LQI+S +A +H+K YI Sbjct: 114 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYI 223
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_HUMAN (Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12 Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2 Query: 467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSS--HTEY---DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784 DED G R L R+ +E+ L +YA+SS T Y DE + D+ QQ LLP V+DP LW VKC IG ER A+ LM+K I + LQI+S +A +H+K YI Sbjct: 116 DEDRS-GARRLQNLWRDQREEE---LGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYI 225
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5H_DANRE (Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.168e-12 Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 2 Query: 467 DEDGGRGIHRRPLLPREDEQEDVEALERRIQARYARSSHTEY-----DEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQK-----CIDKGSELQIRSAIALDHLKNYI 784 DED G R L R+ +E AL +YA+SS E+ ++ + D+ QQ LLP V+DP LW VKC IG ER A+ LM+K C D + LQI+S +A +H+K YI Sbjct: 115 DEDHS-GSRRLQNLWRDSREE---ALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVKDPNLWTVKCKIGEERATAISLMRKFVAYQCTD--TPLQIKSVVAPEHVKGYI 224
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5_USTMA (Transcription elongation factor SPT5 OS=Ustilago maydis GN=SPT5 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11 Identity = 45/157 (28.66%), Postives = 73/157 (46.50%), Query Frame = 2 Query: 335 RKPKAKRRSGSEFFDLEAQVXXXXXXXXXXXXXXFIVDGGAELPDEDGGRGIHRRPLLP--------REDEQEDVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDK---GSELQIRSAIALDHL 772 ++ +AK++ + F D+EA+V DG E D + RR R++E + EAL ++ RY RS+ + +V Q+ L+PSV DP LW V C GRER+ + L++K + + S ++I SA D + Sbjct: 193 QRRRAKKQRRNRFLDVEAEVDDDEEDLDEEEEELAREDGFIEEDIPDDTEDVQRRAAADNQRLDRFRRQEEDTNAEALAEELRQRYGRSARYAAQSDYAEVPQRLLMPSVEDPSLWGVPCKPGRERDIVMTLVRKAMAENFTSSPMRIISAFCRDSI 349
BLAST of CB610476 vs. ExPASy Swiss-Prot
Match: SPT5_SCHPO (Transcription elongation factor spt5 OS=Schizosaccharomyces pombe GN=spt5 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11 Identity = 51/157 (32.48%), Postives = 74/157 (47.13%), Query Frame = 2 Query: 335 RKPKAKRRSGSEFFDLEAQVXXXXXXXXXXXXXXFIVDGGAELP---DEDGGRGIHRRPLLPREDEQE-DVEALERRIQARYARSSHTEYDEETTDVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCID---KGSELQIRSAIALDHLKNYI 784 R+ +A+ ++F D+EA+V DG E D G HR R++ Q D E L + +Y RS D T++V Q+ LLPSV DP +W V+C IG+E++ +M+K +D S L+I SA D L YI Sbjct: 134 RRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEIGREDGFIEEEVGADYVGDDRRHRELDRQRQELQSVDAERLAEEYREKYGRSQTVVGD--TSNVPQRLLLPSVNDPNIWAVRCKIGKEKDIVFTIMRKAMDLQYTSSPLEIISAFQRDSLVGYI 288 The following BLAST results are available for this feature:
BLAST of CB610476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB610476 ID=CB610476; Name=CB610476; organism=Citrus sinensis; type=EST; length=785bpback to top |