CB610521

Overview
NameCB610521
Unique NameCB610521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3481 contig Csv1_Contig3481:330..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.917e-47
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 314
            GTPQVTDSLV+PENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP
Sbjct:  228 GTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 323          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: LIPC_SOLTU (Light-induced protein, chloroplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 5.265e-41
Identity = 80/96 (83.33%), Postives = 92/96 (95.83%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 314
            GTPQ+TDS+V+PENVEFLGQKIDLSPFKG+++SVQDTASSVAK+ISSQPP+KF I+N+NAQSWLLTTYLD++LRISR DAGSVFV IKEGSPLL P
Sbjct:  231 GTPQLTDSIVLPENVEFLGQKIDLSPFKGLITSVQDTASSVAKSISSQPPIKFPITNNNAQSWLLTTYLDDELRISRGDAGSVFVLIKEGSPLLKP 326          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.297e-39
Identity = 77/96 (80.21%), Postives = 90/96 (93.75%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 314
            GTPQ+TDS+V+PENVEFLGQKID+SPFKG+++SVQDTASSV K+ISSQPP+KF I+N+NAQSWLLTTYLD++LRI R DAGSVFV IKEGSPLL P
Sbjct:  231 GTPQLTDSIVLPENVEFLGQKIDVSPFKGLITSVQDTASSVVKSISSQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGSPLLKP 326          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.024e-37
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 308
            GTPQ+TDS+VIP+NV+FLGQKID +PF GI+SS+QDTAS+VAKTISSQPP+KFSISN+  +SWLLTTYLDEDLRISR D GSVFV +KEGS  L
Sbjct:  227 GTPQLTDSIVIPDNVDFLGQKIDFTPFNGIISSLQDTASNVAKTISSQPPIKFSISNTRVESWLLTTYLDEDLRISRGDGGSVFVLLKEGSSFL 320          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: PAP2_BRACM (Plastid lipid-associated protein 2, chloroplastic OS=Brassica campestris GN=PAP2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.028e-36
Identity = 74/96 (77.08%), Postives = 86/96 (89.58%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 314
            GTPQ+TDS+ IPE VEFLGQKIDL+P +G+L+SVQDTA+SVA+TISSQPPLKFS+   +AQSWLLTTYLD+D+RISR D GSVFV IKEGSPLL P
Sbjct:  224 GTPQLTDSIEIPEYVEFLGQKIDLTPIRGLLTSVQDTATSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLNP 319          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: PAP2_ARATH (Probable plastid-lipid-associated protein 2, chloroplastic OS=Arabidopsis thaliana GN=PAP2 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.342e-36
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 314
            GTPQ+TDS+ IPE VE LGQKIDL+P +G+L+SVQDTASSVA+TISSQPPLKFS+   NAQSWLLTTYLD+D+RISR D GSVFV IKEGSPLL P
Sbjct:  215 GTPQLTDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLLTTYLDKDIRISRGDGGSVFVLIKEGSPLLNP 310          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: PAP1_ARATH (Probable plastid-lipid-associated protein 1, chloroplastic OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.699e-36
Identity = 73/96 (76.04%), Postives = 85/96 (88.54%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 314
            GTPQ+TDS+ IPE+VE LGQKIDL+P KG+L+SVQDTASSVA+TIS+QPPLKFS+ + N QSWLLTTYLD+DLRISR D GSV+V IKEGS LL P
Sbjct:  223 GTPQLTDSIEIPESVEVLGQKIDLNPIKGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLLTTYLDKDLRISRGDGGSVYVLIKEGSSLLNP 318          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: PAP1_BRACM (Plastid lipid-associated protein 1, chloroplastic OS=Brassica campestris GN=PAP1 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.938e-35
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLLMP 314
            GTPQ+TDS+ IPE VE LGQKIDL+P KG+L+SVQDTASSVA+TISSQPPLKFS+   +AQSWLLTTYLD+DLRISR D GSVFV I+EGS LL P
Sbjct:  232 GTPQLTDSIEIPEFVEVLGQKIDLNPIKGLLTSVQDTASSVARTISSQPPLKFSLPGDSAQSWLLTTYLDKDLRISRGDGGSVFVLIREGSSLLNP 327          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: PAP2_ORYSJ (Probable plastid-lipid-associated protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 3
Query:   27 GTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 308
            GTPQ+TDS+V+PE  E  GQ IDL+P KGI SS+++ ASSVA+TIS QPPLK  I   NA+SWLLTTYLD++LRISR D  S+FV  KEGS LL
Sbjct:  225 GTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTLL 318          
BLAST of CB610521 vs. ExPASy Swiss-Prot
Match: PAP3_ORYSJ (Probable plastid-lipid-associated protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.717e-21
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = 3
Query:   21 SFGTPQVTDSLVIPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSI-SNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 308
            SF  P+++ S+ +P  V+  GQKI L P + +L+ +Q   +S+A +IS QPPLK  I  N+ A+SWLLTTYLD+DLRISR D G +F+ +KEGSPLL
Sbjct:  276 SFQPPKISSSVDLPAEVDIFGQKISLGPVQQVLNPLQQAFASIAGSISGQPPLKLPIPGNNRARSWLLTTYLDKDLRISRGD-GGLFILVKEGSPLL 371          
The following BLAST results are available for this feature:
BLAST of CB610521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN4.917e-4798.96Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLTU5.265e-4183.33Light-induced protein, chloroplastic OS=Solanum tu... [more]
LIPC_SOLDE1.297e-3980.21Light-induced protein, chloroplastic OS=Solanum de... [more]
CHRC_CUCSA6.024e-3777.66Chromoplast-specific carotenoid-associated protein... [more]
PAP2_BRACM1.028e-3677.08Plastid lipid-associated protein 2, chloroplastic ... [more]
PAP2_ARATH1.342e-3678.13Probable plastid-lipid-associated protein 2, chlor... [more]
PAP1_ARATH8.699e-3676.04Probable plastid-lipid-associated protein 1, chlor... [more]
PAP1_BRACM1.938e-3577.08Plastid lipid-associated protein 1, chloroplastic ... [more]
PAP2_ORYSJ4.182e-3065.96Probable plastid-lipid-associated protein 2, chlor... [more]
PAP3_ORYSJ2.717e-2152.58Probable plastid-lipid-associated protein 3, chlor... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_B01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610521 ID=CB610521; Name=CB610521; organism=Citrus sinensis; type=EST; length=575bp
GGGCAAGTTCGAGGAAGGTATCATTCGGGACGCCTCAGGTAACTGATTCA
CTAGTNATACCGGAAAATGTCGAATTCTTGGGACAAAAGATTGATCTCTC
ACCCTTCAAAGGCATACTCTCTTCAGTCCAAGACACAGCTTCATCTGTTG
CAAAGACCATTTCTAGCCAACCACCTTTGAAGTTCTCTATCTCTAACAGC
AATGCTCAATCATGGTTGCTAACCACATACCTTGATGAAGATCTTCGGAT
TTCAAGGGCAGATGCTGGCAGCGTCTTTGTTTTCATCAAGGAAGGAAGCC
CCCTCTTGATGCCATGAACGCACACCCAAATGTTCACTCCTACGGTATGG
TAATATTGAATAAAGACTTGAACGTGTTGCTGCTTTCTAAGTATCTACAA
GTAATGGAATGATACCATCGGTGTTACTAGATCTGCAGCTAGATACCAGT
GCAGTAGATTACAAAGTAGGAAGTGAGTAAATACTAAACAATTTTTTGTG
CCCCCTAATCTGTCTTAGTTGTTGAATTTGTGTGTTCAATTAAATATAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
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