CB610537 | Citrus Genome Database

Overview


Name	CB610537
Unique Name	CB610537
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	632

Libraries


Library Name	Type
Mature Albedo	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig2624	contig	Csv1_Contig2624:16..647.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF3_HEVBR (Profilin-3 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.069e-60
Identity = 107/131 (81.68%), Postives = 116/131 (88.55%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQTYVD+HLMCDIDGHHLT+AAI+GHDGSVWAQSS+FPQFKPEE+AAIMKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDEHLMCDIDGHHLTAAAIIGHDGSVWAQSSSFPQFKPEEVAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF6_HEVBR (Profilin-6 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.165e-58
Identity = 106/131 (80.92%), Postives = 114/131 (87.02%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AA+MKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNMIVERLGDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLDQGL 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF_PYRCO (Profilin OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.522e-58
Identity = 107/131 (81.68%), Postives = 113/131 (86.26%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQ YVDDHLMCDIDGHHLT+AAI+GHDGSVWAQSS FP+FKPEEI AIMKDF+EPGSLAPTGLHLGGTKYMVIQGE GAVIR              QAL+FGIY+EPLTPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQAYVDDHLMCDIDGHHLTAAAILGHDGSVWAQSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTSQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.988e-58
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQTYVDDHLMC+ DG HLT+AAI+GHDGSVWAQS+NFPQFKP EIAAIMKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEP+TPGQCNM+VERLGDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCETDGQHLTAAAIIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITVKKTTQALIIGIYDEPMTPGQCNMVVERLGDYLVDQGL 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF5_HEVBR (Profilin-5 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.553e-58
Identity = 104/131 (79.39%), Postives = 113/131 (86.26%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS FPQFK +E+AA+MKDF+EPGSLAPTGLHLGGTKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSGFPQFKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF4_HEVBR (Profilin-4 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.197e-57
Identity = 104/131 (79.39%), Postives = 113/131 (86.26%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQTYVDDHLMCDIDGH LT+AAI+GHDGSVWAQSS+FPQFK +E+AAIMKDF+EPGSLAPTGLHLG TKYMVIQGEPGAVIR              QALI GIYDEPLTPGQCNMIVERLGDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIDGHRLTAAAIIGHDGSVWAQSSSFPQFKSDEVAAIMKDFDEPGSLAPTGLHLGSTKYMVIQGEPGAVIRGKKGSGGITVKKTSQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF1_MALDO (Profilin-1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.895e-57
Identity = 105/131 (80.15%), Postives = 111/131 (84.73%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQ YVDD LMCDIDGHHLT+AAI+GHDGSVWA SS FP+FKPEEI AIMKDF+EPGSLAPTGLHLGGTKYMVIQGE GAVIR              QAL+FGIY+EPLTPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQAYVDDRLMCDIDGHHLTAAAILGHDGSVWAHSSTFPKFKPEEITAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEGGAVIRGKKGSGGVTVKKTGQALVFGIYEEPLTPGQCNMIVERLGDYLIDQGL 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF1_RICCO (Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.413e-56
Identity = 104/131 (79.39%), Postives = 110/131 (83.97%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQTYVDDHLMC+I+G+HLTSAAI+G DGSVWAQSS FPQFKPEEI AIM DF EPGSLAPTGL+L GTKYMVIQGEPGAVIR              QALI GIYDEP+TPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQTYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSSTFPQFKPEEITAIMNDFNEPGSLAPTGLYLSGTKYMVIQGEPGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF1_LILLO (Profilin-1 OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.582e-55
Identity = 98/131 (74.81%), Postives = 109/131 (83.21%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQTYVDDHLMCD+DG HLT++AIVGHDGS+WAQS+ FPQFKPEEI  IM DF EPGSLAPTGL+L G KYMVIQGEPGAVIR              QALIFGIY+EP+TPGQCNM+VER+GDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCDVDGQHLTASAIVGHDGSIWAQSAGFPQFKPEEITGIMNDFAEPGSLAPTGLYLAGMKYMVIQGEPGAVIRGKKGSGGVTIKKTGQALIFGIYEEPMTPGQCNMVVERMGDYLVDQGL 131

[Close]

BLAST of CB610537 vs. ExPASy Swiss-Prot
Match: PROF_CHEAL (Profilin OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.741e-54
Identity = 97/131 (74.05%), Postives = 111/131 (84.73%), Query Frame = 2

Query:   92 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRXXXXXXXXXXXXXXQALIFGIYDEPLTPGQCNMIVERLGDYLIDQGL 484
            MSWQTYVDDHLMCDI+G+HL+SAAI+GHDG+VWAQS +FPQ KPEE++AIMKDF EPGSLAPTGLHLGGTKYMVIQGEPG VIR              QALI GIY EP+TPGQCNM+VER+GDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIEGNHLSSAAILGHDGTVWAQSPSFPQLKPEEVSAIMKDFNEPGSLAPTGLHLGGTKYMVIQGEPGDVIRGKKGPGGVTIKKTNQALIIGIYGEPMTPGQCNMVVERIGDYLVEQGM 131

The following BLAST results are available for this feature:

BLAST of CB610537 vs. ExPASy Swiss-Prot

BLAST of CB610537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84


Match Name	E-value	Identity	Description
PROF3_HEVBR	8.069e-60	81.68	Profilin-3 OS=Hevea brasiliensis PE=1 SV=1	[more]
PROF6_HEVBR	1.165e-58	80.92	Profilin-6 OS=Hevea brasiliensis PE=1 SV=1	[more]
PROF_PYRCO	1.522e-58	81.68	Profilin OS=Pyrus communis PE=1 SV=1	[more]
PROF_LITCN	1.988e-58	80.15	Profilin OS=Litchi chinensis PE=1 SV=1	[more]
PROF5_HEVBR	7.553e-58	79.39	Profilin-5 OS=Hevea brasiliensis PE=1 SV=1	[more]
PROF4_HEVBR	2.197e-57	79.39	Profilin-4 OS=Hevea brasiliensis PE=1 SV=1	[more]
PROF1_MALDO	4.895e-57	80.15	Profilin-1 OS=Malus domestica PE=1 SV=1	[more]
PROF1_RICCO	5.413e-56	79.39	Profilin-1 OS=Ricinus communis GN=PRO1 PE=2 SV=1	[more]
PROF1_LILLO	4.582e-55	74.81	Profilin-1 OS=Lilium longiflorum PE=2 SV=1	[more]
PROF_CHEAL	1.741e-54	74.05	Profilin OS=Chenopodium album PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	ALBEDO0003_IVaF_F07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB610537 ID=CB610537; Name=CB610537; organism=Citrus sinensis; type=EST; length=632bp
GGGGGGAGCAAACAACGATAACGAGGGGAAGGAATTAACATAGGAATTAA
ACAAACAATTGAATTTGCCGTGAGACTTTAGATTGTTGAAAATGTCGTGG
CAAACATACGTTGATGATCATCTGATGTGCGATATCGACGGCCATCATCT
CACCTCAGCTGCGATCGTCGGTCACGACGGCAGCGTTTGGGCCCAGAGCT
CCAATTTCCCTCAGTTCAAGCCTGAAGAGATTGCTGCAATCATGAAAGAT
TTTGAAGAGCCCGGTTCTCTTGCCCCAACTGGTTTGCACCTTGGAGGCAC
CAAGTACATGGTAATCCAGGGTGAGCCTGGAGCTGTGATTCGTGGAAAAA
AGGGTTCTGGTGGTGTCACCGTCAAGAAAACGAGCCAAGCCCTGATTTTT
GGTATATACGATGAACCATTGACTCCAGGACAGTGCAACATGATCGTTGA
GAGGTTGGGGGATTATCTCATTGATCAGGGCCTGTAGATCCCATGTCAAC
TTCAAATGGTTTCGATATATTGCTTTCTGGTTTTCGGGCTTTGCCTCTTC
TTCCATATTTGGTCTTGAACTGGCAGTATAAATTTGTTTGCTGCAAAAAT
AACTGTGTGAGGACGAGAGTGATTTTTTTTTC