CB610557

Overview
NameCB610557
Unique NameCB610557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11608 contig Csv1_Contig11608:867..1508. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610557 vs. ExPASy Swiss-Prot
Match: P2C16_ARATH (Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.475e-36
Identity = 88/204 (43.14%), Postives = 124/204 (60.78%), Query Frame = 1
Query:    1 GGDPILDSSCSLSVASETSSLCGEDFLSFEASSEVGTLSSVDIEKSICSVDIIAKASDLPESNIETEIGSNPLAVAVSLEEEIGDGSKQNSSSVVLQLAFENGVRATVGRSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKIPIQMLIGSQVFDGLSKRFSQLTAHFFGVYDGHGGLQVANYCRDRVHTAFAEEIELVKE 612
            G   + D    LSV  + S++  E  L  +A SE+ +LS+  +E  I +  ++A A  + ES+IE    +  L   V+ +         N+S VV++L  EN      GRSV+E+D +PLWG  S+ G R EMEDA A  P+FLK+PI+ML+G    +G+S   + LT HFFGVYDGHGG +VA+YCRDR+H A AEEIE +K+
Sbjct:   81 GSSNVFDEDDVLSVVEDNSAVISEGLLVVDAGSEL-SLSNTAME--IDNGRVLATAIIVGESSIEQVPTAEVLIAGVNQDT--------NTSEVVIRLPDENSNHLVKGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDH--EGMSPSLTHLTGHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKD 271          
BLAST of CB610557 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.763e-33
Identity = 80/186 (43.01%), Postives = 119/186 (63.98%), Query Frame = 1
Query:   55 SSLCGEDFLSFEASSEVGTLSSVDIEKSICSVDIIAKASDLPESNIETEIGSNPLAVAVSLEEEIGDGSKQNSSSVVLQLAFENGVRATVGRSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKIPIQMLIGSQVFDGLSKRFSQLTAHFFGVYDGHGGLQVANYCRDRVHTAFAEEIELVKE 612
            +++  E  +  +A SE+    +V+ +       ++A A  L E+ IE ++ +  + +A SL  ++    +  +S VV++L  EN   A   RSV+E++ +PLWG  S+CG R EMEDAV  +P+FLKIPI+ML+G    +G+S     LT+HFFGVYDGHGG QVA+YC DR+H+A AEEIE +KE
Sbjct:   95 ATIISEGLIVVDARSEISLPDTVETDNG----RVLATAIILNETTIE-QVPTAEVLIA-SLNHDVN--MEVATSEVVIRLPEENPNVARGSRSVYELECIPLWGTISICGGRSEMEDAVRALPHFLKIPIKMLMGDH--EGMSPSLPYLTSHFFGVYDGHGGAQVADYCHDRIHSALAEEIERIKE 270          
BLAST of CB610557 vs. ExPASy Swiss-Prot
Match: P2C06_ORYSJ (Probable protein phosphatase 2C 6 OS=Oryza sativa subsp. japonica GN=Os01g0583100 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 60/102 (58.82%), Postives = 71/102 (69.61%), Query Frame = 1
Query:  316 ATVGRSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKIPIQMLIGSQVFDGLSKRFSQLTAHFFGVYDGHGGLQVANYCRDRVHTAFAEEIELVKECLS 621
            A   RSVF V+ VPLWG  S+CGRRPEMEDAV  V  F  IP+ ML G+ V DGL     +L AHFFGVYDGHGG QVANYCR+R+H A  EE+  ++  +S
Sbjct:  135 AAGARSVFAVECVPLWGHKSICGRRPEMEDAVVAVSRFFDIPLWMLTGNSVVDGLDPMSFRLPAHFFGVYDGHGGAQVANYCRERLHAALVEELSRIEGSVS 236          
BLAST of CB610557 vs. ExPASy Swiss-Prot
Match: P2C53_ORYSJ (Probable protein phosphatase 2C 53 OS=Oryza sativa subsp. japonica GN=Os05g0592800 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.708e-28
Identity = 71/167 (42.51%), Postives = 96/167 (57.49%), Query Frame = 1
Query:  136 SICSVDIIAKASDLPESNIE--TEIGSNPLAVAVSLEEEIGDGSKQNSSSVVLQLAFENGVRATVGRSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKIPIQMLIGSQVFDGLSKRFSQLTAHFFGVYDGHGGLQVANYCRDRVHTAFAEEIELVKE--CLSD 624
            S CSV   +  S +  ++ E   E+G++ LA    L +++       ++SV +  A E        RSVF +D VPLWG  S+CGRRPEMED  A VP F  +P+ M+ G    DGL +   +L AHFF VYDGHGG+QVANYCR R+H    EE+   ++  C SD
Sbjct:   56 SPCSV--ASDCSSVASADFEGFAELGTSLLAGPAVLFDDL------TAASVAVAEAAEPRAVGATARSVFAMDCVPLWGLESICGRRPEMEDDYAVVPRFFDLPLWMVAGDAAVDGLDRASFRLPAHFFAVYDGHGGVQVANYCRKRIHAVLTEELRRAEDDACGSD 214          
BLAST of CB610557 vs. ExPASy Swiss-Prot
Match: P2C77_ARATH (Protein phosphatase 2C 77 OS=Arabidopsis thaliana GN=ABI2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.207e-27
Identity = 72/169 (42.60%), Postives = 102/169 (60.36%), Query Frame = 1
Query:  115 SSVDIEKSICSVDIIAKASDLPESNIETEIGSNPLAVA---VSLEEEIGDGSKQNSSSVVLQLAFENGVRATVGRSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKIPIQMLIGSQVFDGLSKRFSQLTAHFFGVYDGHGGLQVANYCRDRVHTAFAEEIELVKE 612
            S V + +S CS D   K S    +  +  + S+  A+A   +S  +EI    + +  S  +  + +  +  T  RS+FE   VPL+G TS+CGRRPEMED+V+T+P FL++    L+  +V +G +     L+AHFFGVYDGHGG QVANYCR+R+H A  EEI  VKE
Sbjct:   30 SRVTLPESSCSGDGAMKDSSFEINTRQDSLTSSSSAMAGVDISAGDEINGSDEFDPRS--MNQSEKKVLSRTESRSLFEFKCVPLYGVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFN---PHLSAHFFGVYDGHGGSQVANYCRERMHLALTEEI--VKE 191          
BLAST of CB610557 vs. ExPASy Swiss-Prot
Match: P2C56_ARATH (Protein phosphatase 2C 56 OS=Arabidopsis thaliana GN=ABI1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 9.372e-27
Identity = 81/186 (43.55%), Postives = 103/186 (55.38%), Query Frame = 1
Query:   97 SEVGTLSSVDIEKSICSVD---------IIAKASDLPESNIETEIGSNPLAVAVSLEEEIGDGSKQNSSSVVLQLAFENGVRATVGRSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKIPIQMLIGSQVFDGLSKRFS-QLTAHFFGVYDGHGGLQVANYCRDRVHTAFAEEIELVKECLSD 624
            SE G L     E S CSV          ++    + P  N++    ++ + V +S  +EI      N S +  +   +  +  T  RS+FE   VPL+GFTS+CGRRPEMEDAV+T+P FL    Q   GS + DG   RF  Q  AHFFGVYDGHGG QVANYCR+R+H A AEEI   K  L D
Sbjct:   41 SENGDLMVSLPETSSCSVSGSHGSESRKVLISRINSPNLNMKESAAADIVVVDISAGDEI------NGSDITSE---KKMISRTESRSLFEFKSVPLYGFTSICGRRPEMEDAVSTIPRFL----QSSSGSML-DG---RFDPQSAAHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLCD 209          
BLAST of CB610557 vs. ExPASy Swiss-Prot
Match: P2C50_ORYSJ (Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.110e-19
Identity = 46/101 (45.54%), Postives = 65/101 (64.36%), Query Frame = 1
Query:  328 RSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKIPIQMLIGSQVFD--GLSKRFSQLTAHFFGVYDGHGGLQVANYCRDRVHTAFAEEIELVKECLSD 624
            RSV+ +D  P+WG  S  GR  EMEDA A VP F  +P+++L   +  D  GL     +L AH FGV+DGHGG +VANYCR+R+H   +EE++ + + L +
Sbjct:   50 RSVYLMDCAPVWGCASTRGRSAEMEDASAAVPRFADVPVRLLASRRDLDALGLDADALRLPAHLFGVFDGHGGAEVANYCRERIHVVLSEELKRLGKNLGE 150          
BLAST of CB610557 vs. ExPASy Swiss-Prot
Match: P2C03_ARATH (Protein phosphatase 2C 3 OS=Arabidopsis thaliana GN=AIP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 47/132 (35.61%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  208 SNPLAVAVSLEEE---IGDGSKQNSSSVVLQLAFENGVRATVGRSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKIPIQMLIGSQVFDGLSKRFSQLTAHFFGVYDGHGGLQVANYCRDRVHTAFAEE 594
            S+P   +VSLE+    I DG+   +   V+             ++V E D  P +G  SVCGRR +MEDAVA  P F++   +              FS+   H+FGVYDGHG   VA  C++R+H    EE
Sbjct:   77 SSPEEESVSLEDSDVSISDGNSSVNDVAVIPSK----------KTVKETDLRPRYGVASVCGRRRDMEDAVALHPSFVRKQTE--------------FSRTRWHYFGVYDGHGCSHVAARCKERLHELVQEE 184          
The following BLAST results are available for this feature:
BLAST of CB610557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
P2C16_ARATH6.475e-3643.14Protein phosphatase 2C 16 OS=Arabidopsis thaliana ... [more]
P2C07_ARATH1.763e-3343.01Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
P2C06_ORYSJ7.667e-2958.82Probable protein phosphatase 2C 6 OS=Oryza sativa ... [more]
P2C53_ORYSJ1.708e-2842.51Probable protein phosphatase 2C 53 OS=Oryza sativa... [more]
P2C77_ARATH4.207e-2742.60Protein phosphatase 2C 77 OS=Arabidopsis thaliana ... [more]
P2C56_ARATH9.372e-2743.55Protein phosphatase 2C 56 OS=Arabidopsis thaliana ... [more]
P2C50_ORYSJ1.110e-1945.54Probable protein phosphatase 2C 50 OS=Oryza sativa... [more]
P2C03_ARATH1.112e-1135.61Protein phosphatase 2C 3 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_B05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610557 ID=CB610557; Name=CB610557; organism=Citrus sinensis; type=EST; length=642bp
GGGGGGGATCCGATTCTTGATAGCTCTTGCTCGCTTTCTGTGGCAAGTGA
GACCAGTAGCTTATGTGGAGAGGATTTTTTAAGTTTCGAGGCTTCGTCTG
AAGTAGGAACTCTGAGTTCAGTTGACATTGAGAAGAGCATTTGCAGTGTT
GATATTATTGCAAAGGCCAGTGATTTACCAGAGTCAAATATTGAGACTGA
AATAGGGAGTAATCCTCTTGCTGTTGCCGTGAGCCTTGAGGAAGAGATTG
GGGATGGGTCTAAGCAAAATTCATCTTCAGTTGTTCTTCAATTGGCTTTC
GAAAACGGGGTGAGGGCAACAGTTGGACGCAGTGTATTTGAGGTGGATTA
TGTGCCACTTTGGGGATTCACTTCTGTCTGTGGAAGGAGGCCTGAGATGG
AAGATGCAGTTGCAACTGTGCCTTATTTTTTGAAAATTCCTATTCAAATG
TTAATTGGTTCCCAGGTGTTTGATGGCTTGAGCAAGCGATTCAGTCAGCT
GACTGCTCATTTCTTTGGGGTCTATGATGGCCATGGAGGCTTGCAGGTTG
CAAACTACTGTCGTGATCGCGTCCATACTGCTTTTGCTGAGGAGATAGAG
CTTGTTAAGGAATGTCTGAGTGATTGAAGTGTGGTGCATNNC
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