CB610559

Overview
NameCB610559
Unique NameCB610559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2804 contig Csv1_Contig2804:107..339. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610559 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.374e-20
Identity = 45/57 (78.95%), Postives = 55/57 (96.49%), Query Frame = 3
Query:   63 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVKKVVTTVEIED 233
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDV++ VTT+EI++
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDE 68          
BLAST of CB610559 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.374e-20
Identity = 45/57 (78.95%), Postives = 55/57 (96.49%), Query Frame = 3
Query:   63 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVKKVVTTVEIED 233
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDV++ VTT+EI++
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDE 68          
BLAST of CB610559 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.374e-20
Identity = 45/57 (78.95%), Postives = 55/57 (96.49%), Query Frame = 3
Query:   63 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVKKVVTTVEIED 233
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILGDV++ VTT+EI++
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDE 68          
BLAST of CB610559 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.286e-18
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 3
Query:   45 MASEQESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVKKVVTTVEIED 233
            M   +E  V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL DV++ +  VE ++
Sbjct:    1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDE 63          
BLAST of CB610559 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.402e-17
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 3
Query:   54 EQESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVKKVVTTVEIED 233
            E   AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LGD +++VT  + E+
Sbjct:    2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEE 61          
The following BLAST results are available for this feature:
BLAST of CB610559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM3_MOUSE1.374e-2078.95U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu... [more]
LSM3_HUMAN1.374e-2078.95U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
LSM3_BOVIN1.374e-2078.95U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta... [more]
LSM3_DICDI1.286e-1868.25Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
LSM3_SCHPO5.402e-1765.00Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_B11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610559 ID=CB610559; Name=CB610559; organism=Citrus sinensis; type=EST; length=233bp
GGGGCGGGGAGAGAGGGAGAGCGAGGGAGAGCGACTGAGCAAGAATGGCA
AGCGAACAAGAAAGCGCAGTGAAGGAGCCGTTGGATCTCATAAGGCTCAG
CCTCGACGAGCGCATCTACGTTAAGCTCCGATCCGACCGTGAACTCCGCG
GCAAACTCCATGCATATGATCAACATTTAAACATGATTCTTGGGGACGTC
AAAAAAGTTGTTACTACAGTGGAAATCGAGGAT
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