CB610572

Overview
NameCB610572
Unique NameCB610572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 1.010e-40
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTIVDDLVSVD+LIEEHL EEPINE+VQSCDIVAFNKI
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.694e-38
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VL+D+KPWDDETDMKKLEEAVRS+QMEGL WGASKL PVGYGIKKL IM TIVDDLVS+DT+IEE L  EPINEYVQSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.130e-38
Identity = 74/87 (85.06%), Postives = 81/87 (93.10%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VL+D+KPWDDETDMKKLEEAV+S+QMEGL WGASKL PVGYGIKKLQI+ TIVDDLVS+DT+IEE L  EPINEYVQSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 3.973e-37
Identity = 74/87 (85.06%), Postives = 81/87 (93.10%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NEY+QSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.156e-36
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++   EP NE++QSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.972e-36
Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VLLDVKPWDDETDM KLEEAVRS++M+GLLWGASKL  VGYGIKKLQIMLTIVDDLVSVD L+E++L  EP NEY+QSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.364e-36
Identity = 76/87 (87.36%), Postives = 79/87 (90.80%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GASKL PVGYGIKKL IM+TIVDDLVSVD LIE++L  EPINEYVQSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.737e-36
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VLL+VKPWDDETDMKKLEEAVRSVQM GL WGASKL PVGYGIKKL IM+TIVDDLVSVD LIE+HL  EP NEY+QS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.719e-35
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTI+DDL S  T IEE L E PINEYVQSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS--TPIEEVLCEAPINEYVQSCDIVAFNKI 216          
BLAST of CB610572 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.082e-34
Identity = 71/87 (81.61%), Postives = 75/87 (86.21%), Query Frame = 3
Query:   60 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 320
            VL+DVKPWDDETDMKKLEEAVR V+M GL WGASKL PVGYGIKKL IM TIVDDLVS D LIE+ L  EP NEY+QSCDIVAFNKI
Sbjct:  138 VLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
The following BLAST results are available for this feature:
BLAST of CB610572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_ORYSJ1.010e-4094.25Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D2_ARATH4.694e-3886.21Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH6.130e-3885.06Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D1_ORYSJ3.973e-3785.06Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ1.156e-3683.91Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR1.972e-3683.91Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU3.364e-3687.36Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B1_ARATH5.737e-3685.06Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B_WHEAT3.719e-3586.21Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]
EF1B2_ARATH1.082e-3481.61Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_A08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610572 ID=CB610572; Name=CB610572; organism=Citrus sinensis; type=EST; length=606bp
GGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGGC
AAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACAT
GAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTCT
GGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCAA
ATAATGCTTACAATTGTGGATGACTTGGTGTCTGTTGACACCCTCATTGA
GGAACACCTGCTGGAAGAACCAATTAATGAATATGTCCAGAGCTGTGATA
TTGTAGCCTTCAACAAAATCTAATTTGTGGATCCTTTGGCAAAGTGGGTG
CTAGAGAGGCTTCCGGGGATTTTGTCTTGGATAATGATCATAGCAAAGTG
ATATTTATTTTATAATTTTTATTTTTGTTTCAGGAGTCTTGTGTGTTCCA
TTATGGATTTGTTCTTCTATGGATGCTGTCTCTTTGGAGTTTTTTAACTG
TGACTGAAGTTGGTATGCTATATCTGCAATGCAGAACTCTTTAGAGCATT
AATGATTGAGAGCGGCTTTGCCCATTCGAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
back to top