CB610577

Overview
NameCB610577
Unique NameCB610577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig394 contig Csv1_Contig394:1..551. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610577 vs. ExPASy Swiss-Prot
Match: RPAB4_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   96 LETAMDPQP---EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 260
            ++T  D QP   +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:    1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58          
BLAST of CB610577 vs. ExPASy Swiss-Prot
Match: RPAB4_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   96 LETAMDPQP---EPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 260
            ++T  D QP   +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:    1 MDTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58          
BLAST of CB610577 vs. ExPASy Swiss-Prot
Match: RPAB4_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.750e-12
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 3
Query:  114 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 260
            P+ +P+ YICG+C  EN +K  D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct:   10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58          
BLAST of CB610577 vs. ExPASy Swiss-Prot
Match: RPAB4_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 3
Query:  114 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 260
            P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct:   15 PRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63          
The following BLAST results are available for this feature:
BLAST of CB610577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RPAB4_HUMAN1.026e-1255.17DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_BOVIN1.026e-1255.17DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_MOUSE1.750e-1259.18DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB4_SCHPO3.899e-1255.10DNA-directed RNA polymerases I, II, and III subuni... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_B04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610577 ID=CB610577; Name=CB610577; organism=Citrus sinensis; type=EST; length=570bp
GGGGGACCCGCCACAAGTTCAATAAAAGGAAGATTCATCGTGCGCTAAAA
CCCTAGAAAGTTGTTTCTTTGACTTTGTTTGTGAATCTCTTGAACCTTGA
AACTGCAATGGATCCTCAGCCAGAGCCAGTCAGCTACATCTGTGGAGATT
GTGGAATGGAGAACACGCTTAAGCCAGGTGACGTCATCCAGTGCCGTGAA
TGCGGTTACCGTATCTTGTACAAGAAGCGCACCCGCCGAATTGTTCAATA
TGAGGCACGTTAATGGGGAGATGTGGGTGGAGAGCCAATGCCTATGAAGC
ATAACCAGCTGTCTTGCAAACTGCCAGTTTCGTTGTAGCTTCTCAGCAGT
TCACTGTGGTTTGTGTGGTGATTTGTAGAATAGCTGTAATGAACATTCCA
TGATGCAAGTATGTTGTGTGTCGGGCACATATTGTTTCTAAAAGTTCATT
GAAAGTAGATATAAACTGCAAAAATAGAAAGCTTGTTGTGTTTTAGTCGC
CATAGACAAATATATGCTAACTCGTATGGGGTTTGATTCGCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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