CB610580

Overview
NameCB610580
Unique NameCB610580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12372 contig Csv1_Contig12372:19..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 8.461e-89
Identity = 143/194 (73.71%), Postives = 164/194 (84.54%), Query Frame = 1
Query:  157 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKILNNPLGRVITLTVTLTLGWPLYLAFNVSGRP 738
            VP++  K ++D  KRVPC KPPF++  +KKAIPPHCF+RS+ RSFSY++ D+ IA  FYY+A  Y   LP PLSYLAWP+YWA QGC+L G+WV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+AI WY K LNNPLGR++ LTV   LGWPLYLAFNVSGRP
Sbjct:    9 VPTSSKKSETDTTKRVPCEKPPFSVGDLKKAIPPHCFKRSIPRSFSYLISDIIIASCFYYVATNYFSLLPQPLSYLAWPLYWACQGCVLTGIWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQFVLGWPLYLAFNVSGRP 202          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.484e-88
Identity = 150/194 (77.32%), Postives = 164/194 (84.54%), Query Frame = 1
Query:  157 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKILNNPLGRVITLTVTLTLGWPLYLAFNVSGRP 738
            VP    K + DPLKRVP  KP F+LSQ+KKAIPPHCF+RSVLRSFSYVV+DLTIAF  YY+A  Y H LP PLS+    +YWA+QGCIL GVWV+AHECGHHAFSDYQ LDD VGLILHS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPKQK+ I WY+K LNNP GRV+TL VTLTLGWPLYLA NVSGRP
Sbjct:    9 VPPANRKSEVDPLKRVPFEKPQFSLSQIKKAIPPHCFQRSVLRSFSYVVYDLTIAFCLYYVATHYFHLLPGPLSFRGMAIYWAVQGCILTGVWVIAHECGHHAFSDYQLLDDIVGLILHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTLGWPLYLALNVSGRP 202          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.596e-87
Identity = 142/194 (73.20%), Postives = 163/194 (84.02%), Query Frame = 1
Query:  157 VPSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKILNNPLGRVITLTVTLTLGWPLYLAFNVSGRP 738
            V  +P K ++D LKRVPC  PPFT+ ++KKAIPPHCF+RS+ RSFSY++ D+ +A  FYY+A TY   LPHPLSY+AWP+YWA QG +L GVWV+AHECGHHAFSDYQWLDDTVGLI HS LLVPYFSWKYSHRRHHSNTGSL+RDEVFVPK+K+ I WY K LNNPLGR + LTV  TLGWPLY AFNVSGRP
Sbjct:    9 VSPSPKKSETDTLKRVPCETPPFTVGELKKAIPPHCFKRSIPRSFSYLIWDIIVASCFYYVATTYFPLLPHPLSYVAWPLYWACQGVVLTGVWVIAHECGHHAFSDYQWLDDTVGLIFHSFLLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQFTLGWPLYWAFNVSGRP 202          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.817e-84
Identity = 137/183 (74.86%), Postives = 158/183 (86.34%), Query Frame = 1
Query:  190 PLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKILNNPLGRVITLTVTLTLGWPLYLAFNVSGRP 738
            PL RVP +KPPFT+ Q+KKAIPPHCF+RS+L SFSYVV+DL+ AF+FY IA TY H LP P S +AWP+YW LQGC+L GVWV+AHECGHHAFS YQW+DD VGL LHS LLVPYFSWK SHRRHHSNTGSLDRDEVFVPK K+ + W++K LNNPLGR ++L VTLT+GWP+YLAFNVSGRP
Sbjct:   25 PLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFY-IATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRP 206          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 1.149e-69
Identity = 113/187 (60.43%), Postives = 143/187 (76.47%), Query Frame = 1
Query:  175 KVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKILNNPLGRVITLTVTLTLGWPLYLAFNVSGR 735
            +    PL       PPFT+S +K+AIPPHCF+RSV+RS  Y+VHD  IA++FY++AD YI  LP PL+YLAWP+YW  Q  IL G+WV+ HECGHHAFSDYQW+DDTVG ILHS L+ PYFSWKYSHR HH+NT SLD DEV++PK K  +  Y K+LN+P GR++ + +T TLG+PLYL  N+SG+
Sbjct:    8 RTSQKPLMERVSVDPPFTVSDLKQAIPPHCFKRSVIRSSYYIVHDAIIAYIFYFLADKYIPILPAPLAYLAWPLYWFCQASILTGLWVIGHECGHHAFSDYQWVDDTVGFILHSFLMTPYFSWKYSHRNHHANTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTLGFPLYLFTNISGK 194          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.496e-40
Identity = 81/190 (42.63%), Postives = 113/190 (59.47%), Query Frame = 1
Query:  217 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKIL----------------NNPLGRVITLTVTLTLGWPLYLAFNVSGR 735
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG +  G+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G   K                    P+  +  + +    GWP YL  N SG+
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKESAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQ 224          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.260e-40
Identity = 81/190 (42.63%), Postives = 113/190 (59.47%), Query Frame = 1
Query:  217 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPL-SYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAK----------------ILNNPLGRVITLTVTLTLGWPLYLAFNVSGR 735
            P FT+ ++++ IP HCFERS LR   +V  DLT A + + +A T I +  +PL  YLAWP YW +QG +  G+WV+AHECGH +FS  + L++TVG ILHS LLVPY SW+ SH +HH  TG + +D+VFVPK ++ +G   K                    P+  +  + +    GWP YL  N SG+
Sbjct:   36 PEFTIKEIRECIPAHCFERSGLRGLCHVAIDLTWASLLF-LAATQIDKFENPLIRYLAWPAYWIMQGIVCTGIWVLAHECGHQSFSTSKTLNNTVGWILHSMLLVPYHSWRISHSKHHKATGHMTKDQVFVPKTRSQVGLPPKENAAAAVQEEDMSVHLDEEAPIVTLFWMVIQFLFGWPAYLIMNASGQ 224          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33
Identity = 74/178 (41.57%), Postives = 106/178 (59.55%), Query Frame = 1
Query:  205 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKILNNPLGRVITLTVTL-TLGWPLYLAFNVSGR 735
            P ++PPF +  ++ AIP HC+ +S LRS SYVV D+ IA     IA  Y+       S+  WP+YWA QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE +VP  +     Y K+ ++   R++  TV L  L +PLYL +   G+
Sbjct:   28 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDI-IAVAALAIAAVYVD------SWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERV---YKKLPHST--RMLRYTVPLPMLAYPLYLCYRSPGK 193          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.217e-30
Identity = 68/180 (37.78%), Postives = 102/180 (56.67%), Query Frame = 1
Query:  205 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP---KQKTAIGWYAKILNNPLGRVITLTVTLTLGWPLYLAFNVSGR 735
            P + PPF L++++  IP HC+ +  LRS SYVV D+        IA        H  S+L +P+YWA+QG +   ++V+ H+CGH +FSD Q L++ VG ILHS +LVPY  W+ SH+ HH N G+++ DE +VP   K    +G+  K L   +   +       L +P+YL     G+
Sbjct:   24 PSAPPPFRLAEIRNVIPKHCWVKDPLRSLSYVVRDVIFVATLIGIAI-------HLDSWLFYPLYWAIQGTMFWAIFVLGHDCGHGSFSDSQLLNNVVGHILHSAILVPYHGWRISHKTHHQNHGNVETDESWVPMPEKLYNKVGYSTKFLRYKIPFPL-------LAYPMYLMKRSPGK 189          
BLAST of CB610580 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 68/178 (38.20%), Postives = 101/178 (56.74%), Query Frame = 1
Query:  205 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILIGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKILNNPLGRVITLTVTL-TLGWPLYLAFNVSGR 735
            P ++PPF +  ++ AIP HC+ +S LRS SYV  D+  A     +A  Y        S+  WP+YW  QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE +VP  +     Y  + ++   R++  TV L  L +P+YL +   G+
Sbjct:   25 PSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDI-FAVAALAMAAVYFD------SWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPEKL---YKNLPHST--RMLRYTVPLPMLAYPIYLWYRSPGK 190          
The following BLAST results are available for this feature:
BLAST of CB610580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD6E_ARATH8.461e-8973.71Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E2_SOYBN5.484e-8877.32Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU1.596e-8773.20Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN2.817e-8474.86Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL1.149e-6960.43Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORIS2.496e-4042.63Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD12_MORAP3.260e-4042.63Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD3E_ARATH6.585e-3341.57Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_TOBAC5.217e-3037.78Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA1.518e-2938.20Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_G09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610580 ID=CB610580; Name=CB610580; organism=Citrus sinensis; type=EST; length=738bp
GGGGGAGAGCCGAACGTTTACAACTCACAACGCGGCCGGCGAAGGCGAGA
AAGAGAGAGGGAGAGAAAGTGAGGTCTCTCATTTTCTTCTTCTTTGCAGT
CCAAGTGCTTCGCTTCTTCAGGTTGACGAACAATGGGTGCAGGTGGACGA
ATGGCTGTACCTTCAACGCCCATGAAGGTGGATTCTGATCCCTTGAAGCG
AGTTCCATGCTCAAAGCCACCATTCACACTCAGCCAAGTAAAGAAAGCTA
TCCCACCTCACTGTTTTGAGCGGTCTGTTCTCCGTTCATTCTCCTACGTT
GTTCATGACCTCACCATTGCCTTTGTCTTTTACTACATTGCCGACACTTA
CATTCACCAACTTCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACT
GGGCTCTTCAAGGCTGCATTTTAATTGGAGTTTGGGTTGTAGCTCATGAA
TGTGGCCACCATGCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGG
CCTTATCCTCCACTCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATA
GCCATCGCCGCCATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTA
TTTGTCCCCAAGCAAAAAACCGCCATTGGTTGGTATGCCAAGATCCTTAA
CAACCCACTTGGCCGAGTCATAACACTTACTGTCACCCTCACCCTTGGTT
GGCCTTTGTACCTGGCATTCAATGTATCCGGTAGGCCT
back to top