CB610638

Overview
NameCB610638
Unique NameCB610638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610638_ssr242 microsatellite CB610638_ssr242:242..251. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig415 contig Csv1_Contig415:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB610638 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.374e-37
Identity = 80/129 (62.02%), Postives = 92/129 (71.32%), Query Frame = 3 
Query:   87 AMATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSNPGQVNKPRGAXXXXXXXXXXXXXXIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKE 473
            A+AT  +T KRKPVF+KV+QLKPGTTGHTLTVKV+ +N   V   R                I ECL+GD+TG I FTARNDQVD+M PG TVILRN++IDMFKG+MRL VDKWGRIE T  A F VKE
Sbjct:    8 AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANI-VVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKE 135
The following BLAST results are available for this feature:
BLAST of CB610638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH3.374e-3762.02Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_A03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610638 ID=CB610638; Name=CB610638; organism=Citrus sinensis; type=EST; length=742bp
GGGGGTGCGCCCCCCTATTAGTCGCTGCTTCAATTCTCATTCCCTCACAA
ATCCTAAACCTAGACCTAGTATTCGGGTTCTTTATTGCGATGGCGACGGC
GGGTGCGACGGCAAAGAGGAAGCCGGTCTTTATTAAGGTCGATCAGCTCA
AGCCAGGAACCACCGGCCATACGCTGACGGTCAAGGTGGTGTCGTCGAAC
CCCGGGCAGGTCAACAAGCCACGTGGCGCAAGGTCATTGTCCTCTCTCTC
TCAGCCTTCTCGACCACCTCGCATCGCCGAGTGCCTCGTCGGCGACGACA
CCGGTGCCATCTACTTCACTGCCCGCAACGACCAAGTTGATATTATGACG
CCGGGCACCACTGTGATTCTACGCAATGCTAAGATTGATATGTTCAAGGG
GTCAATGAGGCTAGCAGTCGACAAATGGGGACGCATTGAAGTCACCGAAC
CTGCTGACTTTGAAGTTAAAGAGAGTAACAATCTTTCTTTAGTTGAGTAT
GAGTTAGTTAATGTGGAGTGATTGGTATCATTTGGAGGTGAATATTTGTA
GGTTAGTATTTCTGGAGGTATGATTCTTCTTGTTCCCCGTCAAAACTGTT
AACTGGGATCCAGTTTTTATGGATGGTGGTACAAAGATCTTGCTGATATG
GTTTTTCCAGCTTTGATATCAATGTGATAGACACAAGTAATTAAGTTTCT
GATTGAGTTTGAAATGGATCAGTTAATGTTATATTTTAATTT
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