CB610664

Overview
NameCB610664
Unique NameCB610664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:3..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610664 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.653e-43
Identity = 101/185 (54.59%), Postives = 126/185 (68.11%), Query Frame = 3
Query:  126 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTDFVK 623
            S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SDAE WNGR AM+GLVALA T+FVK
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVK 191          
BLAST of CB610664 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.065e-32
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  207 LQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTDFVK 623
            ++RN   +VR M ++      +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA T++VK
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVK 192          
BLAST of CB610664 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.205e-29
Identity = 76/179 (42.46%), Postives = 99/179 (55.31%), Query Frame = 3
Query:   87 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTDFV 620
            MA  ++  S  G++VV        +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA T+ +
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEII 164          
BLAST of CB610664 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.205e-29
Identity = 69/150 (46.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  177 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTDFV 620
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA T+ +
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEII 159          
BLAST of CB610664 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.045e-28
Identity = 67/123 (54.47%), Postives = 82/123 (66.67%), Query Frame = 3
Query:  273 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTDFV 620
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++DAELWNGRFAM+GLVALA T+F+
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFI 223          
BLAST of CB610664 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 58/158 (36.71%), Postives = 74/158 (46.84%), Query Frame = 3
Query:  180 SSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPR--------ISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTDFVK 623
            +S+   P  L R  +    C      + + ST PP  P          +   ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T          P F       K D  G  T DAE+ NGRFAM+G  A+ V + ++
Sbjct:   16 ASINVRPAPLLRTAAPKRVCKHIVRAENNPSTPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQ 167          
The following BLAST results are available for this feature:
BLAST of CB610664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA6.653e-4354.59Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.065e-3249.34Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU3.205e-2942.46Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.205e-2946.00Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU6.045e-2854.47High molecular mass early light-inducible protein ... [more]
CBR_DUNBA3.220e-1336.71Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_G04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610664 ID=CB610664; Name=CB610664; organism=Citrus sinensis; type=EST; length=624bp
GCGGGGATCAAAATTGCAAGTAAGGAGCCCATGATCCTAAAAACTCCCAG
TTGCTAAATTATTCCTCCGTTGCATAATCTACAAAAATGGCTGCTTCACT
CGCCACTCAATCTATGCTTGGAAGCTCTGTCGTCGCAGCTCGTGTTACCG
GCATCAGGAAATCTGGGGTGTACCAATTTTCCTCTGTTAAGTACTTACCT
GGTACTCTGCAGAGAAATGTTAGCTTATCAGTGCGCTGCATGGCTAAGAA
TGAGCAGCAGAAGGATCAATCAACTCAGCCACCGAAGCTACCGCGTATAA
GCACGAAGTTCTCTGACGTGTTTGCGTTCAGCGGGCCGGCACCGGAGAGG
ATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGCGGTGGA
GCTATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGAGTTG
CCTGGTTCTTGGGGACCAGTGTTCTGCTTTCGGTTGCGTCCCTGGTTCCT
TTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACTTC
GGATGCTGAGTTGTGGAATGGGAGGTTCGCTATGATGGGTCTTGTTGCTT
TGGCTGTCACTGACTTTGTTAAAG
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