CB610698

Overview
NameCB610698
Unique NameCB610698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig416 contig Csv1_Contig416:3..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610698 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.686e-47
Identity = 98/179 (54.75%), Postives = 120/179 (67.04%), Query Frame = 3
Query:  111 METERKKQE---LRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASREFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHL 638
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP              S +FDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  ++TNSVK W KLN Y   H M D A+P AA +S +YN L
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDL 179          
BLAST of CB610698 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.916e-24
Identity = 67/184 (36.41%), Postives = 94/184 (51.09%), Query Frame = 3
Query:  126 KKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASREFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVH------YAAAESKHLLLTN---------SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYN 632
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  E + H P L KR + Q  ++ + A + A  +  E Q  G            Y+  E     L +         +V AW  LN   LF  +A + VPTAA WS+KYN
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYN 199          
BLAST of CB610698 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.983e-21
Identity = 68/189 (35.98%), Postives = 96/189 (50.79%), Query Frame = 3
Query:  117 TERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASREFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG-----------------PRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYN 632
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  E D   PP+ K+V++Q  S  + A   A+ L  E +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYN 201          
BLAST of CB610698 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 62/187 (33.16%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   99 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASREFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYN 632
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + +E D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYN 203          
BLAST of CB610698 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.571e-18
Identity = 62/187 (33.16%), Postives = 94/187 (50.27%), Query Frame = 3
Query:   99 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASREFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYN 632
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + +E D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYN 203          
BLAST of CB610698 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 53/176 (30.11%), Postives = 84/176 (47.73%), Query Frame = 3
Query:  129 KQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASREFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPR--------AAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYN 632
            + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP                + + + P L K+ +SQ    +  A++  +  V++      R        AA +YAA              W  LN   LF  +A + +PTA  WS+KYN
Sbjct:   38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQA---LTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYN 198          
BLAST of CB610698 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 52/174 (29.89%), Postives = 83/174 (47.70%), Query Frame = 3
Query:  111 METERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASREFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYN 632
            M  E +++ L++L F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P             +    D   PP+ K+V++Q +S+ + A +    +       G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN
Sbjct:    1 MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYN 170          
BLAST of CB610698 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.682e-12
Identity = 49/147 (33.33%), Postives = 67/147 (45.58%), Query Frame = 3
Query:  198 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASREFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHL 638
            LY YAK  +GPL+  V TVE AV  VV PVY +F  VP                E D H P   K+V+SQ           A+ +V E +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN +
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVG----ELDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEV 137          
The following BLAST results are available for this feature:
BLAST of CB610698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH4.686e-4754.75REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI1.916e-2436.41Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH1.983e-2135.98REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ1.571e-1833.16REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI1.571e-1833.16REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
Y2778_ARATH4.278e-1630.11REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
SRPP_HEVBR5.230e-1429.89Small rubber particle protein OS=Hevea brasiliensi... [more]
SRP_PHAVU1.682e-1233.33Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_C02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610698 ID=CB610698; Name=CB610698; organism=Citrus sinensis; type=EST; length=640bp
GGGGATGTTGGATTCGTTACATATTATTGAACGCTGCAATCAATAGCAAG
CTAATTTCTCGCGAGATCTAAAAGCAATATCGAATAATTCATCTTTTGCG
CAGTGAAGATATGGAGACTGAGAGGAAGAAACAGGAACTGAGGCATCTTG
GATTTATGAGGATAGCCGCGATTAAGGCTCTGGTGTGCGTGTCGAGTTTG
TACGACTACGCAAAACGCAACTCGGGGCCGCTACGCTCGCCGGTTGGGAC
TGTCGAAAGCGCCGTGACTGCCGTCGTGGGACCTGTTTATCAGAAATTCA
AGGGCGTGCCTGATGATCTCCTCGTTTTTCTTGATAAGAAGGTGGATGAT
GCTTCACGCGAGTTTGACGAGCACGCTCCCCCTTTGGCCAAGCGGGTTGC
CAGCCAAGTACATAGTCTAATTGAAACAGCATCACAGAAAGCTCAAAAGC
TTGTGATTGAGGCCCAAACCGGGGGGCCTCGAGCAGCTGTCCATTATGCT
GCTGCTGAGTCTAAACACCTTCTGCTAACAAATTCCGTGAAAGCATGGTA
TAAACTAAACCACTATGCATTGTTCCACACAATGGCAGATATGGCTGTTC
CCACAGCTGCACAGTGGTCCAAGAAGTATAACCATCTTGT
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