CB610701

Overview
NameCB610701
Unique NameCB610701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610701_ssr403 microsatellite CB610701_ssr403:403..412. BLAST: Citrus ESTs to Prunus persica proteins V1
CB610701_ssr463 microsatellite CB610701_ssr463:463..474. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB610701 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.345e-28
Identity = 50/60 (83.33%), Postives = 55/60 (91.67%), Query Frame = 1
Query:  130 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 309
            DCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   45 DCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of CB610701 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-25
Identity = 47/60 (78.33%), Postives = 50/60 (83.33%), Query Frame = 1
Query:  130 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 309
            DCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   39 DCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CB610701 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.951e-23
Identity = 43/60 (71.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  130 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 309
            DCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   40 DCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CB610701 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:  130 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 309
            DCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   40 DCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CB610701 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 28/60 (46.67%), Postives = 31/60 (51.67%), Query Frame = 1
Query:  130 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 309
            DC   C  RC  +S    C   C  CCA C CVP G  GN + CPCY N  T  G+ KCP
Sbjct:   37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CB610701 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.348e-11
Identity = 29/60 (48.33%), Postives = 32/60 (53.33%), Query Frame = 1
Query:  130 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 309
            DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   53 DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CB610701 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 1
Query:  133 CGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 309
            C   C+ RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
The following BLAST results are available for this feature:
BLAST of CB610701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SNAK2_SOLTU1.345e-2883.33Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH1.066e-2578.33Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH4.951e-2371.67Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH6.466e-2370.00Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
RSI1_SOLLC4.348e-1146.67Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GAST1_SOLLC4.348e-1148.33Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
SNAK1_SOLTU5.678e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_C05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610701 ID=CB610701; Name=CB610701; organism=Citrus sinensis; type=EST; length=573bp
GCGGGGGCAAAGAAGAGAAGCAGACAGATAGCATAACTATTTGTAAGCCA
TGGCCATCTCCAAAGCTCTTATTGCTTCAGTCCTCCTCTCACTACTTGTT
TTTCATCTCGTTGAAGCTGATGAGCATACGACTGTGGAGGTGCATGCCAG
GCCAGGTGCCGATTATCGTCGAGGCCAAACCTGTGCCACAGGGCATGTGG
TACCTGCTGCGCCCGTTGCAATTGTGTTCCTCCAGGCACTGCAGGCAACA
CTGAGGTCTGCCCTTGCTACGCCAATATGACCACCCACCATGGCAGACGC
AAGTGCCCTTGAAGTATTTTAAGTTGAAAGGACGTCGTCTACTTTCTTAA
TTAATTTTTTTGGAGCTTACATTCTCTCTTTCTCTCTATATATGTATAAA
TATGTGTGTGTGCGTGTGTGTTGCCTGTGGCCAGGAAAACAGAGTTGATC
CATATTCCTATGAATAAATAAATAAATCCATTTCATGTTACTTATTTGTG
GATACATAAGTTTCGAGAGAATAATAATAAGAGGTTTCTTCTCCTTACGA
CAACAAAAAAAAAAAAAAAAAAA
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