CB610712

Overview
NameCB610712
Unique NameCB610712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length365
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1869 contig Csv1_Contig1869:241..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB610712 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.510e-23
Identity = 42/58 (72.41%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    4 GAACQSRCQLSSRPNLIHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 177
            G AC +RC+LSSRP L +RACGTCCARC CVPPGTSG+ E CPCYA++TTH  +RKCP
Sbjct:   47 GGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104
[Close]
BLAST of CB610712 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.735e-21
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 GAACQSRCQLSSRPNLIHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 177
            G+AC +RC+LS RP L HRACGTCC RC CVPPGT G+ + C CYA++TTH GRRKCP
Sbjct:   41 GSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98
[Close]
BLAST of CB610712 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.167e-18
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 GAACQSRCQLSSRPNLIHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 177
            G  C+ RC  SSR  L  RAC +CC+RC CVPPGTSG+  +CPCYA++TTH GR KCP
Sbjct:   42 GGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99
[Close]
BLAST of CB610712 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.696e-18
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 GAACQSRCQLSSRPNLIHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 177
            G  C+ RC  SSRPNL  RAC +CC RC CVPPGT+G+  +CPCYA++TT  GR KCP
Sbjct:   42 GGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99
The following BLAST results are available for this feature:
BLAST of CB610712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU6.510e-2372.41Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH2.735e-2168.97Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA2_ARATH2.167e-1862.07Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH3.696e-1862.07Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIIaF_A10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIIaF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610712 ID=CB610712; Name=CB610712; organism=Citrus sinensis; type=EST; length=365bp
GGGGGAGCTGCATGCCAGTCCAGGTGCCAGTTATCGTCGAGGCCAAACTT
GATTCACAGGGCATGTGGAACCTGCTGTGCCCGTTGCAAGTGTGTTCCTC
CGGGCACTTCAGGCCATCTTGAAGTCTGCCCTTGCTACGCCACCATGACC
ACTCACCATGGCAGACGCAAGTGCCCTTAAAACAATGATTGTGCATGATA
CATGATACATGCACCTGTCCGTCGCTGCTTGTGGCTACTGGCTAGTGATA
CATCTATTTATATATCATCAAATTAAATAAAGCGATGTTAATTGCTCATT
GCTGTGTGCAAATTAATTAAATTAATGTTTGTTCGTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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