CB610812
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 1.436e-65 Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 1 Query: 97 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 438 M Q +AMPVA +LS+ICN +N L+ +L+ P S P LSI+CARVGGVEIP NKRIEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDL Sbjct: 1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114 HSP 2 Score: 105.531 bits (262), Expect = 1.436e-65 Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 3 Query: 528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 692 RRFNALAI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK++AIAGKKK + Sbjct: 115 RRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 9.949e-28 Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 3 Query: 522 LQRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 692 L+RR + I+RL E+ CYRG RH GLPCRGQ T N RT KGK VAIAGKKKAPR Sbjct: 98 LRRRVGS-EIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153 HSP 2 Score: 67.781 bits (164), Expect = 9.949e-28 Identity = 31/90 (34.44%), Postives = 56/90 (62.22%), Query Frame = 1 Query: 151 GHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKY 420 G + T +S + + + GL +Q RVG E+PNNK ++ LQ ++G+GR ++ Q+L L + NK+ +D++ +ELI +R+EV ++ Sbjct: 3 GLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQH 92
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_MYCGA (30S ribosomal protein S13 OS=Mycoplasma gallisepticum GN=rpsM PE=3 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 4.354e-25 Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 1 Query: 238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDL 438 AR+ G++IPNNKR+E SL YI+G+G+ RA++IL K++ NK KD+S+EEL IR S Y++EGDL Sbjct: 2 ARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVASTYVLEGDL 69 HSP 2 Score: 58.9214 bits (141), Expect = 4.354e-25 Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 3 Query: 528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680 RR AL I+RL E+ Y G+RH +GLP RGQ TK+N RT KG R +A KK Sbjct: 70 RRDVALNIKRLMEVGSYAGLRHRRGLPVRGQRTKSNARTRKGPRKTVANKK 120
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_MYCAP (30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.354e-25 Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3 Query: 528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680 RR +L I+RL E++CYRGIRH +GLP RGQ TK+N RT KG R +AGKK Sbjct: 70 RREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120 HSP 2 Score: 67.3958 bits (163), Expect = 4.354e-25 Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1 Query: 238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438 AR+ +EIPNNKR+ SL YI+G+GRT A++I K++ I KD+SE +L IR+ +Y+ EGDL Sbjct: 2 ARILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKEYVTEGDL 69
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.574e-25 Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 3 Query: 528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 692 RR A+ I+RL ++ CYRG+RH +GLP RGQ T N RT KGK VAIAGKKKA R Sbjct: 71 RREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKKATR 125 HSP 2 Score: 62.7734 bits (151), Expect = 9.574e-25 Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDL 438 AR+ GV IP+NKR+ SL+YI+G+G +AR+I L++ E+K +SE+E++ IR+ + + Y +EGDL Sbjct: 2 ARIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRDYRVEGDL 70
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.250e-24 Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 1 Query: 238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDL 438 ARV VEIPN KR SL YI G+G+T A QIL D + ENK + +SEEEL IR+E KY+ EGDL Sbjct: 2 ARVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKKYVTEGDL 69 HSP 2 Score: 62.7734 bits (151), Expect = 1.250e-24 Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 3 Query: 516 GFLQRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680 G L+R N L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R IAGKK Sbjct: 67 GDLRREIN-LNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_PEDPA (30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.633e-24 Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 3 Query: 528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 683 RR +L I+RL+EI YRG+RH +GLP RGQHTKNN RT KGK+V+IAG+KK Sbjct: 70 RRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRKK 121 HSP 2 Score: 59.6918 bits (143), Expect = 1.633e-24 Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1 Query: 238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438 AR+ GV++P +KRI L YI G+G T A++IL D ++ I +D++ ++ IR EV Y++EGDL Sbjct: 2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEVDNYLVEGDL 69
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_ACHLI (30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A) GN=rpsM PE=3 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 4.668e-24 Identity = 31/68 (45.59%), Postives = 49/68 (72.06%), Query Frame = 1 Query: 238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438 AR+ GV+IP KR+ SLQYI+G+G+T A+++L + + I KD+++++L IR EV+K + EGDL Sbjct: 2 ARIAGVDIPTQKRVVISLQYIYGIGQTTAQEVLKNANVSEDIRVKDLNDDQLSAIRGEVAKIVTEGDL 69 HSP 2 Score: 65.4698 bits (158), Expect = 4.668e-24 Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 3 Query: 528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 686 RR + L I+RL EI YRGIRH +GLP GQ+T+NN RT KGK A+ GKK+A Sbjct: 70 RRESTLNIKRLMEIGSYRGIRHRKGLPVNGQNTRNNARTRKGKPKAVTGKKQA 122
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_CLONN (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.076e-24 Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 3 Query: 504 FFIWGFLQRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680 F I G L+R AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + AI+GKK Sbjct: 64 FVIEGDLRRTI-ALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121 HSP 2 Score: 63.929 bits (154), Expect = 6.076e-24 Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1 Query: 238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDL 438 AR+ G+++P KR+E L YI+G+G R+R+IL + + + KD+SEEE+ TIRD + K ++IEGDL Sbjct: 2 ARIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGKNFVIEGDL 70
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_HERA2 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsM PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.884e-24 Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 3 Query: 528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR-VAIAGKKKAPR 692 RR L I+RL +I CYRGIRH +GLP RGQ TK N RT +GK+ AI GKKKA + Sbjct: 71 RRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKATK 126 HSP 2 Score: 65.0846 bits (157), Expect = 7.884e-24 Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1 Query: 238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDL 438 AR+ GV+IP NKR+E SL YI+G+GRT + +IL + N KD++E+E+I +R+ + + Y +EGDL Sbjct: 2 ARISGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDYTVEGDL 70 The following BLAST results are available for this feature:
BLAST of CB610812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CB610812 ID=CB610812; Name=CB610812; organism=Citrus sinensis; type=EST; length=800bpback to top |