CB610812

Overview
NameCB610812
Unique NameCB610812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.436e-65
Identity = 83/114 (72.81%), Postives = 95/114 (83.33%), Query Frame = 1
Query:   97 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDL 438
            M Q +AMPVA +LS+ICN   +N L+  +L+ P S  P    LSI+CARVGGVEIP NKRIEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDL
Sbjct:    1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDL 114          

HSP 2 Score: 105.531 bits (262), Expect = 1.436e-65
Identity = 47/55 (85.45%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 692
            RRFNALAI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK++AIAGKKK  +
Sbjct:  115 RRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.949e-28
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 3
Query:  522 LQRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 692
            L+RR  +  I+RL E+ CYRG RH  GLPCRGQ T  N RT KGK VAIAGKKKAPR
Sbjct:   98 LRRRVGS-EIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153          

HSP 2 Score: 67.781 bits (164), Expect = 9.949e-28
Identity = 31/90 (34.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  151 GHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKY 420
            G   +  T   +S  + +   + GL +Q  RVG  E+PNNK ++  LQ ++G+GR ++ Q+L  L + NK+ +D++ +ELI +R+EV ++
Sbjct:    3 GLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQH 92          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_MYCGA (30S ribosomal protein S13 OS=Mycoplasma gallisepticum GN=rpsM PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 4.354e-25
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 1
Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ G++IPNNKR+E SL YI+G+G+ RA++IL   K++ NK  KD+S+EEL  IR   S Y++EGDL
Sbjct:    2 ARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVASTYVLEGDL 69          

HSP 2 Score: 58.9214 bits (141), Expect = 4.354e-25
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 3
Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            RR  AL I+RL E+  Y G+RH +GLP RGQ TK+N RT KG R  +A KK
Sbjct:   70 RRDVALNIKRLMEVGSYAGLRHRRGLPVRGQRTKSNARTRKGPRKTVANKK 120          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_MYCAP (30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.354e-25
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 3
Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            RR  +L I+RL E++CYRGIRH +GLP RGQ TK+N RT KG R  +AGKK
Sbjct:   70 RREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120          

HSP 2 Score: 67.3958 bits (163), Expect = 4.354e-25
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438
            AR+  +EIPNNKR+  SL YI+G+GRT A++I    K++  I  KD+SE +L  IR+   +Y+ EGDL
Sbjct:    2 ARILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKEYVTEGDL 69          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.574e-25
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 3
Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 692
            RR  A+ I+RL ++ CYRG+RH +GLP RGQ T  N RT KGK VAIAGKKKA R
Sbjct:   71 RREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKKATR 125          

HSP 2 Score: 62.7734 bits (151), Expect = 9.574e-25
Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDL 438
            AR+ GV IP+NKR+  SL+YI+G+G  +AR+I   L++ E+K    +SE+E++ IR+ + + Y +EGDL
Sbjct:    2 ARIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRDYRVEGDL 70          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.250e-24
Identity = 39/68 (57.35%), Postives = 46/68 (67.65%), Query Frame = 1
Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDL 438
            ARV  VEIPN KR   SL YI G+G+T A QIL D  + ENK  + +SEEEL  IR+E  KY+ EGDL
Sbjct:    2 ARVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKKYVTEGDL 69          

HSP 2 Score: 62.7734 bits (151), Expect = 1.250e-24
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 3
Query:  516 GFLQRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            G L+R  N L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R  IAGKK
Sbjct:   67 GDLRREIN-LNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_PEDPA (30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.633e-24
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 683
            RR  +L I+RL+EI  YRG+RH +GLP RGQHTKNN RT KGK+V+IAG+KK
Sbjct:   70 RRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRKK 121          

HSP 2 Score: 59.6918 bits (143), Expect = 1.633e-24
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GV++P +KRI   L YI G+G T A++IL D ++   I  +D++ ++   IR EV  Y++EGDL
Sbjct:    2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEVDNYLVEGDL 69          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_ACHLI (30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.668e-24
Identity = 31/68 (45.59%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDL 438
            AR+ GV+IP  KR+  SLQYI+G+G+T A+++L +  +   I  KD+++++L  IR EV+K + EGDL
Sbjct:    2 ARIAGVDIPTQKRVVISLQYIYGIGQTTAQEVLKNANVSEDIRVKDLNDDQLSAIRGEVAKIVTEGDL 69          

HSP 2 Score: 65.4698 bits (158), Expect = 4.668e-24
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 3
Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 686
            RR + L I+RL EI  YRGIRH +GLP  GQ+T+NN RT KGK  A+ GKK+A
Sbjct:   70 RRESTLNIKRLMEIGSYRGIRHRKGLPVNGQNTRNNARTRKGKPKAVTGKKQA 122          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_CLONN (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.076e-24
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 3
Query:  504 FFIWGFLQRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 680
            F I G L+R   AL I+RL EI CYRGIRH +GLP RGQ TK N RT KG + AI+GKK
Sbjct:   64 FVIEGDLRRTI-ALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121          

HSP 2 Score: 63.929 bits (154), Expect = 6.076e-24
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDL 438
            AR+ G+++P  KR+E  L YI+G+G  R+R+IL +  +  +   KD+SEEE+ TIRD + K ++IEGDL
Sbjct:    2 ARIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGKNFVIEGDL 70          
BLAST of CB610812 vs. ExPASy Swiss-Prot
Match: RS13_HERA2 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsM PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.884e-24
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  528 RRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR-VAIAGKKKAPR 692
            RR   L I+RL +I CYRGIRH +GLP RGQ TK N RT +GK+  AI GKKKA +
Sbjct:   71 RRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKATK 126          

HSP 2 Score: 65.0846 bits (157), Expect = 7.884e-24
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 1
Query:  238 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSK-YMIEGDL 438
            AR+ GV+IP NKR+E SL YI+G+GRT + +IL    +  N   KD++E+E+I +R+ + + Y +EGDL
Sbjct:    2 ARISGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDYTVEGDL 70          
The following BLAST results are available for this feature:
BLAST of CB610812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR13_ARATH1.436e-6572.8130S ribosomal protein S13, chloroplastic OS=Arabid... [more]
RT13_ARATH9.949e-2866.67Small ribosomal subunit protein S13, mitochondrial... [more]
RS13_MYCGA4.354e-2554.4130S ribosomal protein S13 OS=Mycoplasma gallisepti... [more]
RS13_MYCAP4.354e-2562.7530S ribosomal protein S13 OS=Mycoplasma agalactiae... [more]
RS13_ACICJ9.574e-2563.6430S ribosomal protein S13 OS=Acidiphilium cryptum ... [more]
RS13_MYCA51.250e-2457.3530S ribosomal protein S13 OS=Mycoplasma arthritidi... [more]
RS13_PEDPA1.633e-2467.3130S ribosomal protein S13 OS=Pediococcus pentosace... [more]
RS13_ACHLI4.668e-2445.5930S ribosomal protein S13 OS=Acholeplasma laidlawi... [more]
RS13_CLONN6.076e-2462.7130S ribosomal protein S13 OS=Clostridium novyi (st... [more]
RS13_HERA27.884e-2460.7130S ribosomal protein S13 OS=Herpetosiphon auranti... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610812 ID=CB610812; Name=CB610812; organism=Citrus sinensis; type=EST; length=800bp
GGGGAAGTTCCTCGCCTTTGCATCTCTCCACTCGAGCTTGCCGTTAGTCA
GATCTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAATGG
TACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCAAC
GGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTTTC
CAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGGAG
GTGTCGAGATTCCAAATAACAAGCGAATTGAGTACTCGCTTCAGTACATT
CATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAAAT
GGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAATTC
GTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGGTAATAATTCCT
TATTTCTTCGTTAGAGGCACCTTTTGAGCTTTGATTTCGCTGTTTGAGAA
TTTTTTTTTATTTGGGGGTTTTTGCAGAGGCGGTTCAATGCACTTGCTAT
TAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATTCGCCATATTCAGG
GCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTGTCGCACATTGAAG
GGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCCCTCGTTAANNAAA
TGACTTTTTTCCTGTTTATTTAATGGATGATGTTGATTTTCTATTGTATT
GAATTTGAATGTGAATCATTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
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