CB610835

Overview
NameCB610835
Unique NameCB610835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610835_ssr33 microsatellite CB610835_ssr33:33..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig409 contig Csv1_Contig409:1..531. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB610835 vs. ExPASy Swiss-Prot
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.214e-30
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = 2 
Query:   62 MGKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQNYQEKEKLAHRY 277
            MGKQPV++KAVVYA+SPFQQKIMPGLWKDL GKIHHKVS+NWIS  LLLGPLVGTY+YVQ++ EKEKL HRY
Sbjct:    1 MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQHFLEKEKLEHRY 72
The following BLAST results are available for this feature:
BLAST of CB610835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR8_SOLTU1.214e-3083.33Cytochrome b-c1 complex subunit 8 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIaF_H07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIaF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610835 ID=CB610835; Name=CB610835; organism=Citrus sinensis; type=EST; length=531bp
GGGGGCCGAGAAATTGCGAGAAATTAAGAAACGAGAGAGAGAGAGAGAGA
AATCAAAAGACATGGGAAAGCAGCCGGTGAGAATGAAGGCGGTGGTGTAC
GCACTGTCGCCATTTCAACAAAAGATTATGCCGGGGCTTTGGAAGGATCT
GACCGGTAAGATCCATCACAAGGTCTCCGATAATTGGATCAGCACTATCC
TTTTGCTCGGTCCTCTCGTCGGCACCTACGCGTATGTCCAAAATTACCAG
GAGAAGGAGAAGTTGGCACACAGGTATTGAAGCAAGCTGATGTGCCTCTA
TTTTTTCAGAAGCTTAAGGTTCTTGTGAATTAGCTACAACTCTTGTTGAA
GTTGTGAAACATAATTGAAATTGCTATGTAGTTGAGACTACAGTAGTTTG
ATTTGTGGGTTTTGTTGATGGATTGAGAACTATTGTCAAAATTCTGAGCA
ATATTTTCTCTTTCTTTTGATGAAATAAATTTGATGCATGGATTGCTAAA
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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