CB610839

Overview
NameCB610839
Unique NameCB610839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2568 contig Csv1_Contig2568:139..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610839 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.025e-47
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 3
Query:  150 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSEASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 440
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDS ASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CB610839 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.947e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  150 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSEA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 437
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CB610839 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.395e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  150 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSEA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 437
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CB610839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI1.025e-4798.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.947e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.395e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_A02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610839 ID=CB610839; Name=CB610839; organism=Citrus sinensis; type=EST; length=669bp
GGGGAAGCACAGCACCCCGTGAGCGAGCCGCTAGCTTTTGCCTATAGCTA
CTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACAT
CCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAACAA
TGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGAT
GGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACCCTT
GGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCCTG
CGGTGAGAGAGGATTCTGAGGCCTCTTCTGCCTGGGCCCCAGATCCCATC
ACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGA
GCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGG
TGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTAA
GTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCTGTT
GTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCATGAT
TTTGTCTATTAACTTGTCAATAAAAGTAAAGAATTCCTGCAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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