CB610841

Overview
NameCB610841
Unique NameCB610841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12513 contig Csv1_Contig12513:533..1407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 58/124 (46.77%), Postives = 80/124 (64.52%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKFQTEIGKCWAAEINSRRNSRLA 369
            A+VHD+AE IVGDI P+D +PKE K R E+EA+ ++ ++L   +R +E+ ELW EYE  +S EA  VK  D+ EMILQA EYE    K   L +F+ STAGKF         +E+ + RN+ +A
Sbjct:   69 ALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELETERNASMA 191          
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 59/125 (47.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYE-MEH--GKVLDEFFLSTAGKFQTEIGKCWAAEINSRRNSRLA 369
            A+VHD+AE IVGDI P+D +PKE K R E+EA+ ++ ++L   +R +E+ ELW EYE  +S EA  VK  D+ EMILQA EYE +EH  G+ L +F+ STAGKF         +E+ + R++ +A
Sbjct:   74 ALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGR-LQDFYDSTAGKFNHPEIVQLVSELEAERSTNIA 196          
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.927e-22
Identity = 58/128 (45.31%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKFQTEIGKCWAAEINSRRNSRLANKLS 381
            A+VHD+AE IVGDI P+D VP+E K R E+EA+ ++ ++L   ++ +E+ ELW EYE  +S EA  VK  D+ EMILQA EYE    K   L +F+ STAGKF         +E+ + RN+ +A   S
Sbjct:   75 ALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKFSHPEIVQLVSELEAERNANIAGAAS 201          
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.289e-20
Identity = 55/103 (53.40%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKF 306
            A+VHD+AE IVGDI P+D V K  K R E++A+  +  +L  G+R +EI  LW EYE  +S EA LVK+ D +EMI+QA EYE   GK   L EFF+ST GKF
Sbjct:   61 ALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162          
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.751e-20
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYE-----MEHGKVLDEFFLSTAGKFQTEIGKCWAAEINSRR 354
            A+VHD+ E++VGD TP D + KE K ++E+ A+ E+   L G +  +EI +LW EYE+  + EA LVKDFDK EMILQA EYE     +E+   L  FF ST GKF   + K  A ++ S R
Sbjct:   69 ALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTLSGEV-GKEIFDLWQEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLALQLESDR 189          
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: HDDC2_XENLA (HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.431e-19
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVLGGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKV--LDEFFLSTAGKFQTEIGKCWAAEINSRRNSRLA 369
            A+VHD+AE IVGDI P+D + KE K R E+ A+  + ++L   ++  E+ +LW EYE+  + EA  VK+ D+ EMILQALEYE    +   L +F+ STAGKF+        + I   RNS +A
Sbjct:   71 ALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFKHPEIVQLVSAIYEERNSAIA 193          
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: YB92_YEAST (HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae GN=YBR242W PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.576e-18
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL---GGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEH--GKVLDEFFLSTAGKFQTEIGKCWAAEINSRRNSRLAN 372
            A+VHDIAE++VGDITP D + KE K R E E +  +C  L      + A+EI + W  YEN  S+EA  VKD DK EM++Q  EYE E+   K  D+FF + A   +T+  K W +++  +R    A+
Sbjct:  105 ALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVA-SIKTDEVKGWTSDLVVQRQKYFAD 231          
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: YC0H_SCHPO (HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe GN=SPCC4G3.17 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.275e-17
Identity = 54/121 (44.63%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL---GGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEHGKVLDEFFLSTAGK-FQTEIGKCWAAEINSRR 354
            A+VHD+AE+IVGDITP + V KE K RME EA+  + + L      ++AEEI+EL+ EYE+ ++ EA  VKD DK EMI Q  EYE +     D    + AGK  Q  + K W  ++   R
Sbjct:   66 AVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQFTWAGKLIQHPLVKGWLNDVLQER 186          
BLAST of CB610841 vs. ExPASy Swiss-Prot
Match: YGK1_YEAST (HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae GN=YGL101W PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    4 AIVHDIAEAIVGDITPSDGVPKEVKSRMEQEALNEMCKVL---GGGMRAEEIQELWAEYENNASIEANLVKDFDKVEMILQALEYEMEH-GKVLDEFFLSTAGKFQTEIGKCWAAEINSRRNS 360
            A+VHD AE++VGDITP+D + KE K R E E +  +C+ +        + EI + W  YE    +E   VKD DK EM++Q  EYE ++ GK   + FL      +T+  K W   +   R +
Sbjct:   86 ALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFLGAINDIKTDEVKKWTQSLLEDRQA 208          
The following BLAST results are available for this feature:
BLAST of CB610841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDDC2_MOUSE8.927e-2246.77HD domain-containing protein 2 OS=Mus musculus GN=... [more]
HDDC2_HUMAN8.927e-2247.20HD domain-containing protein 2 OS=Homo sapiens GN=... [more]
HDDC2_BOVIN8.927e-2245.31HD domain-containing protein 2 OS=Bos taurus GN=HD... [more]
HDDC2_DANRE1.289e-2053.40HD domain-containing protein 2 OS=Danio rerio GN=h... [more]
HDDC2_DICDI3.751e-2046.72HD domain-containing protein 2 homolog OS=Dictyost... [more]
HDDC2_XENLA2.431e-1943.55HD domain-containing protein 2 OS=Xenopus laevis G... [more]
YB92_YEAST1.576e-1842.19HD domain-containing protein YBR242W OS=Saccharomy... [more]
YC0H_SCHPO2.275e-1744.63HD domain-containing protein C4G3.17 OS=Schizosacc... [more]
YGK1_YEAST4.017e-1436.59HD domain-containing protein YGL101W OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IVaF_A05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IVaF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610841 ID=CB610841; Name=CB610841; organism=Citrus sinensis; type=EST; length=872bp
GGGGCAATCGTGCATGATATTGCAGAAGCTATTGTTGGGGACATAACACC
ATCAGATGGTGTGCCTAAAGAAGTAAAGAGCAGAATGGAGCAGGAAGCTT
TAAATGAAATGTGCAAAGTTCTTGGCGGAGGGATGAGGGCCGAAGAGATC
CAAGAATTATGGGCGGAGTATGAAAATAATGCCTCCATAGAAGCTAATCT
TGTGAAAGATTTTGACAAAGTTGAGATGATTTTGCAGGCATTGGAGTATG
AAATGGAGCATGGGAAGGTGCTGGATGAGTTTTTCCTTTCCACAGCAGGG
AAATTTCAGACAGAAATAGGAAAGTGTTGGGCAGCCGAGATCAATTCAAG
AAGAAACTCAAGGTTGGCGAACAAACTCAGTTGATCTCGTGGTCTGGTCA
TGGTTCTTTGCCAAGTGAAGTCAAACCAAACTTTTTGAGTGGTAATCACA
GGACTGAGAACCGTCCCCTAGGTAGGTGAACCTTGTTCATCTTCCCTCTT
TATTTGAATAGGTCAACTACTGACTTTTTATCTAGAAGCAACCTGAAAGG
AGCTTCCATTGGCGACTACAGGATAAGAAAAGCTGTCAAAATCTGGAAAT
TCAACATAGCAGCTTCTATATCCTGCTGATACTGACTTTTAATCAGACAA
GCATGTAGTAATTTTTTTTTACTTTTTTGGGGTTAGCAGTGGAATTATAA
TTGTTAGTAGTTACTAACTTACTACTAGTTATACCTTCGGTGGTCAAATT
TTACTGATAGATCATTAGTAGGGCTGCATGAAGGCTTTGCTTTGAAAAGT
ATTAAGGCGGTTATAATCAAACTATGTGTTATNTTCATCCTTATAATTTA
AATAATATATTCAGCCAGCAAT
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