CB610845

Overview
NameCB610845
Unique NameCB610845
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig411 contig Csv1_Contig411:1..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB610845 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.238e-23
Identity = 55/109 (50.46%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:   94 PQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGDTRSKHH 420
            PQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSG+TRSKHH
Sbjct:   15 PQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110

HSP 2 Score: 26.5646 bits (57), Expect = 2.238e-23
Identity = 9/12 (75.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query:   59 MLEKLWDDVVAG 94
            +L+KLWDD+VAG
Sbjct:    3 LLDKLWDDIVAG 14
The following BLAST results are available for this feature:
BLAST of CB610845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.238e-2350.46Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIaF_G06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIaF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610845 ID=CB610845; Name=CB610845; organism=Citrus sinensis; type=EST; length=500bp
GGGGACTGAAGAAGAGCTTTAAGATTTAGAAGATCNCAGCTAAATTGTAA
ATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGCCTCAGC
CTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCA
GTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTC
TCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGA
CGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCAC
CCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAA
GCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGG
ACACTAGGAGCAAGCATCATCACTAGTGGATGATACGCTACAGCGATGTA
AATGAATGTTATGGGTCACCAACTCACCGGATTATTTGCCTGTAGTCTGT
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