CB610851

Overview
NameCB610851
Unique NameCB610851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610851_ssr449 microsatellite CB610851_ssr449:449..458. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2589 contig Csv1_Contig2589:438..1075. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.892e-20
Identity = 46/57 (80.70%), Postives = 51/57 (89.47%), Query Frame = 1
Query:  139 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+VITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1
Query:  154 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+Y ITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.442e-20
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = 1
Query:  154 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+Y ITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.435e-19
Identity = 41/53 (77.36%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  151 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y+ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.448e-19
Identity = 41/53 (77.36%), Postives = 50/53 (94.34%), Query Frame = 1
Query:  151 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            STAT VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+YV+TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.370e-16
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1
Query:  139 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYVI 303
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVYV+
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.370e-16
Identity = 35/51 (68.63%), Postives = 47/51 (92.16%), Query Frame = 1
Query:  151 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVI 303
            ++AT ++++LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVYV+
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.149e-15
Identity = 35/50 (70.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:  154 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVI 303
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVYV+
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.149e-15
Identity = 35/50 (70.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:  154 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVI 303
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVYV+
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of CB610851 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.627e-13
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  160 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYVITK 309
            TC DI   ++A+ILPPLGVFL+ GC + FWI ++LTILGYIPGII+A+YVI K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of CB610851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LTI6A_ORYSJ2.892e-2080.70Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSJ6.442e-2082.69Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI6.442e-2082.69Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
RCI2B_ARATH1.435e-1977.36Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH2.448e-1977.36Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ7.370e-1673.21Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU7.370e-1668.63Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU8.149e-1570.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL8.149e-1570.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA7.627e-1366.04Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIaF_H04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIaF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610851 ID=CB610851; Name=CB610851; organism=Citrus sinensis; type=EST; length=641bp
GCGGGGAAACAAAAATACCAATTAGATATAACAAAAGCAGTTACTCAAAA
CCCTAAGCACTTCTTTAATCAAAGTTCTTGTTTTTTGACTCTAAATTTTA
TTTTATTCCATTTTACACTTTTTAAGAATCAATCAAAGATGGCAGATGGA
AGCACAGCAACATGCGTAGATATTCTCTTGGCTGTTATCTTGCCTCCTCT
TGGTGTCTTTCTCAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGTTTGC
TCTTGACAATTCTGGGGTATATCCCTGGAATTATTTATGCTGTTTATGTC
ATCACCAAGAAGTGATCTCTCGTCTTCATCTATTGAGAGATCCCAAGGGC
ATCATGTGTTATGAGATCTTTTATTTACAACCGTTAGATGGGCAGCTCTG
ATTTGATGTAGCCAGATGGGTTCTGATTCATAATCAACTGGGGTGTGCGT
GTGTGTGTGGGAGAGAGCACTTGTTTCGTTTGTTAATCTTTATCGTTTTC
TTTTCTTTCATTTGTCCTTTTTAATGAATTTTAATTCAATATGTTGATGT
AAAGTGGAGTATTATTGAGTGTGTAAATTGCCTTGTGAATCATTACAAGT
CCCCACAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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