CB610857

Overview
NameCB610857
Unique NameCB610857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610857_ssr349 microsatellite CB610857_ssr349:349..366. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7001 contig Csv1_Contig7001:746..1218. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB610857 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.263e-12
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 2 
Query:    5 ALTDDNTCLDGFDGRFMDGNVKAAIRRRVTNVAQVTSNALALVNRFAARHQ 157
            ALTD+ TC+DGF G+ MDG +K ++R +V  VA+VTSNALALVN FAA+H+
Sbjct:  142 ALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKHK 192
The following BLAST results are available for this feature:
BLAST of CB610857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA3.263e-1262.7521 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIaF_F04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIaF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610857 ID=CB610857; Name=CB610857; organism=Citrus sinensis; type=EST; length=473bp
GGGCGCACTAACTGATGATAACACTTGCTTAGATGGTTTTGATGGTCGTT
TCATGGATGGAAATGTAAAGGCTGCGATCAGGAGAAGGGTCACAAATGTT
GCCCAAGTCACTAGTAACGCTCTTGCTTTGGTTAATCGATTCGCCGCTAG
GCACCAAGCTGCAGCAGTCACCGAGAACCCTTAGATTTCGTCTAAGGTGA
CCTCTGCTGTCTTCTGTATAATATGGTATCTCAATATGATATCCCTTAGG
TTCGTGCTTAGTCTAGTTTCTGTCTTATATAAGAAAGTTTGGTTTTCTGG
GCAACCAACAAAAAGTACAGTCAGTATCTAAACATAAGAGTTTGTGTTCT
GCTGCTGCTGCTGCTGTTGTTGTTGTTTTTTTTCCCTCTTTTAAGATACT
TGAGTTTTGTTTAAATAAAATAAAACTAAATGAAACTAAAGAGTGTGCCA
ACTATTGCTTGCAAAAAAAAAAA
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