CB610874

Overview
NameCB610874
Unique NameCB610874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7741 contig Csv1_Contig7741:35..554. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB610874 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.391e-12
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = 3 
Query:  117 IQIQRDDTTFDAYVVG-KEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGMDTAEA*HLMSG-----LDWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVP 512
            ++ +++      Y+   K   PG++V+ EWWG++  + N      +    GF A  PD Y GK   +  +A  LM+      +D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P
Sbjct:    5 VEFEKNGVKVRGYIATPKWGGPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLP 145
[Close]
BLAST of CB610874 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 3 
Query:  117 IQIQRDDTTFDAYVVGKEDA-PGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGMDTAEA*HLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVP 512
            ++ +++      Y+   + A P ++V  EWWG++  + N      +L + GF A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P
Sbjct:    5 VEFEKNGVKVRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLP 145
The following BLAST results are available for this feature:
BLAST of CB610874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
USF_AQUPY2.391e-1232.87Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
DLHH_AQUAE7.691e-1131.21Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIaF_E02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIaF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610874 ID=CB610874; Name=CB610874; organism=Citrus sinensis; type=EST; length=520bp
GAGGGAGCAGATCAACTCCGCTTCTTAAGCCATCTCTCGCAAGGACTCAC
TTTCCCGCCGGTTATCGCTTTGCAGTCAGATCAATGGCAGACTCTGCAGC
TTCTCCCTTCAAGAAAATCCAGATTCAGAGAGATGATACTACTTTTGATG
CATATGTGGTTGGCAAAGAAGACGCCCCTGGGATTGTTGTAGTTCAGGAG
TGGTGGGGTGTTGATTTTGAGATCAAGAACCATGCTGTCAAAATCTCCCA
ACTAAATCCTGGATTCAAGGCACTTATACCAGATTTATATCGGGGAAAGG
TTGGTATGGATACTGCTGAAGCATAGCACTTGATGAGTGGTCTTGATTGG
CCAGGTGCTGTCAAGGATATCCACGCTTCAGTTAATTGGCTTAAGGCAAA
TGGTTCCAAGAAGGTTGGCGTGACTGGATATTGCATGGGAGGTGCTCTCG
CTATTGCAAGTTCTGTCTTAGTTCCTGAGGTTGATGCTGTTGTTTCGTTT
TATGGGGTTCCCCCACCGGA
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