CB610908

Overview
NameCB610908
Unique NameCB610908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610908_ssr81 microsatellite CB610908_ssr81:81..92. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8275 contig Csv1_Contig8275:52..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.342e-91
Identity = 162/201 (80.60%), Postives = 177/201 (88.06%), Query Frame = 3
Query:  123 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYPR 725
            MAQAVE+WYKQMPIITR+YLTAA++TTVGCSLDIISP+NL L+PTLVVK YQ+WRL+TNFL+FRK            ARYCKLLEENSFRG+TADFLYMLLFGA+ LTG VLIGGMIPYLS SFAKIIFLSNSLT MMVYVW+KQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAWVDLLGMI   AYYF  +VYPR
Sbjct:    1 MAQAVEEWYKQMPIITRSYLTAAVITTVGCSLDIISPYNLYLNPTLVVKQYQYWRLVTNFLYFRKMDLDFMFHMFFLARYCKLLEENSFRGKTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGMIAGHAYYFLAEVYPR 201          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 328.176 bits (840), Expect = 2.798e-89
Identity = 160/201 (79.60%), Postives = 173/201 (86.07%), Query Frame = 3
Query:  123 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYPR 725
            MAQAVE+WYKQMPIITR+YLTAA+VTTVGCSL+IISP+NL L+PTLVVK YQFWRL+TNFL+FRK            ARYCKLLEENSFRG+T DFLYMLLFGAT LTG VLIGGMIPYLS SF+KIIFLSNSLT MMVYVW+KQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW D LGMI   AYYF   VYPR
Sbjct:    1 MAQAVEEWYKQMPIITRSYLTAAVVTTVGCSLEIISPYNLYLNPTLVVKQYQFWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGKTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPR 201          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.389e-88
Identity = 154/201 (76.62%), Postives = 174/201 (86.57%), Query Frame = 3
Query:  123 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYPR 725
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVW+K NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S WVDLLGMI    YYF EDVYPR
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPR 201          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.389e-88
Identity = 154/201 (76.62%), Postives = 174/201 (86.57%), Query Frame = 3
Query:  123 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYPR 725
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVW+K NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S WVDLLGMI    YYF EDVYPR
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPR 201          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 6.892e-88
Identity = 153/201 (76.12%), Postives = 173/201 (86.07%), Query Frame = 3
Query:  123 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYPR 725
            MAQAVE+WY+QMPIITR+YLTAA+VTTVGC+L+IISP++L L+P LVV+HY+ WRL+TNFL+FRK            ARYCKLLEENSFRGRTADF YMLLFGAT LT  VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVW+K NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S WVDLLGMI    YYF EDVYPR
Sbjct:    1 MAQAVEEWYRQMPIITRSYLTAAVVTTVGCTLEIISPYHLYLNPKLVVQHYEIWRLVTNFLYFRKMDLDFLFHMFFLARYCKLLEENSFRGRTADFFYMLLFGATVLTSIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPR 201          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.460e-47
Identity = 88/192 (45.83%), Postives = 122/192 (63.54%), Query Frame = 3
Query:  147 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYP 722
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVW+++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+     Y+F EDV+P
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFP 190          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.460e-47
Identity = 88/192 (45.83%), Postives = 122/192 (63.54%), Query Frame = 3
Query:  147 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYP 722
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVW+++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+     Y+F EDV+P
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFP 190          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.519e-47
Identity = 87/192 (45.31%), Postives = 122/192 (63.54%), Query Frame = 3
Query:  147 YKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYP 722
            Y Q+P ++R Y TA ++TT    L++I+PF L  +P L+ KH+Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T           L   F  ++FL  + T+M+VYVW+++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+     Y+F ED++P
Sbjct:   10 YLQIPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLITNFLFFGPVGFNFLFNMIFLYRYCRMLEEGSFRGRTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDIFP 190          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.113e-45
Identity = 88/200 (44.00%), Postives = 125/200 (62.50%), Query Frame = 3
Query:  123 MAQAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYP 722
            MAQ  EDWYK +PI+T+ Y+T  +VT+V   L ++ P  L L+  LV   Y+FWRL TNF F+ +             R+ +LLEE+SFRGR+AD+L+M +FG+  L    LI     + ++   K++FL+ S+  M++YVW+++NP +H+SFLGLFTF+A YLPWV+L            DLLG +   AYYF ED YP
Sbjct:    1 MAQPFEDWYKNLPIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESSFRGRSADYLFMWIFGSFLL----LIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLLGAVAGHAYYFLEDAYP 196          
BLAST of CB610908 vs. ExPASy Swiss-Prot
Match: DERL3_BOVIN (Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.108e-44
Identity = 86/198 (43.43%), Postives = 120/198 (60.61%), Query Frame = 3
Query:  129 QAVEDWYKQMPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKXXXXXXXXXXXXARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWNKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMITRPAYYFXEDVYP 722
            Q +   + Q+P +TRTY  A ++TT    L+++SPF L  +P LV + +Q WRLITNFLFF               RYC++LEE SFRGRTADF++M LFG   +T   L+G +            FL  +LT M+VYVW++++P + ++F GL TF A +LPW L+G  + +G S  VDLLG+     YYF EDV+P
Sbjct:    4 QGLATEFLQVPAVTRTYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITNFLFFGPLGFSFFFNMLFVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLF-----------FLGQALTAMLVYVWSRRSPGVRVNFFGLLTFQAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFP 190          
The following BLAST results are available for this feature:
BLAST of CB610908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DER22_ARATH1.342e-9180.60Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]
DER21_ARATH2.798e-8979.60Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ... [more]
DERL2_ORYSJ1.389e-8876.62Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]
DER22_MAIZE1.389e-8876.62Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1[more]
DER21_MAIZE6.892e-8876.12Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2[more]
DERL2_PONAB3.460e-4745.83Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1[more]
DERL2_HUMAN3.460e-4745.83Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1[more]
DERL2_MOUSE4.519e-4745.31Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2[more]
DERL2_DICDI1.113e-4544.00Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL3_BOVIN6.108e-4443.43Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_G10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610908 ID=CB610908; Name=CB610908; organism=Citrus sinensis; type=EST; length=726bp
TTTTTTTTTTCACCACTTCACTCAGAAATCTTTAAATTTTCAAAAAGAAA
AAAAAAATCAGCACACTTTCAGGGCTCTAGAGATAGATAGATAAACCATA
TAGTCAAAAAAATTAAAAGAAAATGGCTCAAGCTGTTGAAGATTGGTACA
AACAGATGCCTATCATCACCCGCACGTATCTCACAGCCGCTATCGTCACC
ACCGTCGGCTGCTCTCTCGATATAATATCTCCTTTTAATCTGTGCTTGCA
CCCAACGTTAGTGGTTAAGCATTATCAGTTTTGGCGCCTTATCACCAATT
TTCTCTTCTTCCGGAAAATGGATTTAGATTTTTTGTTCCATATGTTTTTT
CTCGCACGATACTGCAAGCTTCTTGAAGAGAATTCCTTCAGGGGAAGGAC
TGCAGATTTCTTGTACATGCTTTTATTTGGAGCCACTTTTCTAACCGGCA
CTGTTCTTATTGGGGGGATGATACCTTACTTGTCAGAATCCTTTGCAAAA
ATCATTTTCCTTAGCAATTCATTGACACTCATGATGGTTTATGTATGGAA
CAAACAAAATCCTTTCATCCACATGAGTTTTTTGGGCCTTTTTACATTTA
CAGCAGCTTACTTACCATGGGTGCTCTTGGGATTCTCAGTCTTCGTTGGC
GCTAGCGCTTGGGTGGATTTGCTGGGGATGATAACCCGGCCTGCCTACTA
TTTTNNCGAAGATGTTTATCCTAGGA
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