CB610923

Overview
NameCB610923
Unique NameCB610923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length247
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610923_ssr237 microsatellite CB610923_ssr237:237..246. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:636..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+GKF+RRFRLP+NAKVEQVKASMENGVLTVTVPK+E  KP+VKAIEISG
Sbjct:  109 VERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.413e-19
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+G F+RRFRLP+NAKVEQVKASMENGVLTVTVPK+E  KP+VKAIEISG
Sbjct:  101 VERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.682e-19
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+GKF+R FRLPDNAKV+QVKASMENGVLTVTVPK+E  KP+VKAIEISG
Sbjct:   22 VERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.682e-19
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+GKFLRRFRLPDNAK EQ+KASMENGVLTVTVPK+E  KP+VK+I+ISG
Sbjct:  109 VERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.265e-18
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+G+F+RRFRLP+NAKV+QVKASMENGVLTVTVPK E  KPEVKAIEISG
Sbjct:   97 VERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.652e-18
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+GKF+RRFRLP+NAK++QVKASMENGVLTVTVPK+E N P+VK+IEISG
Sbjct:  102 VERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.157e-18
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+GKF+RRFRLP+NAK++QVKASMENGVLTVTVPK+E  KP+VK+IEISG
Sbjct:  102 VERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.157e-18
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            +ERS+GKF+RRFRLP+NAK++QVKASMENGVLTVTVPK+E  KPEVK+IEISG
Sbjct:  102 MERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.817e-18
Identity = 42/53 (79.25%), Postives = 52/53 (98.11%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+GKF+RRFRLP+NAKVE+VKASMENGVL+VTVPK +E+KPEVK+++ISG
Sbjct:  104 VERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB610923 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.679e-18
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    4 VERSTGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEENKPEVKAIEISG 162
            VERS+GKF RRFRLP+NAKV +VKASMENGVLTVTVPK+E  KP+VKAIEISG
Sbjct:  102 VERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
The following BLAST results are available for this feature:
BLAST of CB610923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
HSP16_SOYBN1.951e-1986.7918.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN7.413e-1984.9117.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOYBN9.682e-1984.91Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS17A_ORYSJ9.682e-1983.0217.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ1.265e-1884.9116.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP12_SOLPE1.652e-1881.1317.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLPE2.157e-1881.1317.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_SOLLC2.157e-1881.1317.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP17_ARATH2.817e-1879.2517.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP14_SOYBN3.679e-1883.0217.5 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_F08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610923 ID=CB610923; Name=CB610923; organism=Citrus sinensis; type=EST; length=247bp
GGGGTCGAGAGGAGCACTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGA
CAATGCTAAGGTGGAGCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCA
CAGTGACTGTTCCTAAACAGGAGGAGAATAAACCTGAAGTTAAGGCCATT
GAGATCTCTGGCTAAGTGATAAGTGTAAATGTTTTCAAGATTGTGTCTTT
GGTTTGCTAATAAATTTGGTACAAAAGCAAAGCCCTTGTGTGTGTGT
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