CB610928

Overview
NameCB610928
Unique NameCB610928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length299
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11087 contig Csv1_Contig11087:212..510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB610928 vs. ExPASy Swiss-Prot
Match: IPO5_MOUSE (Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 4.274e-14
Identity = 34/97 (35.05%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:    8 RVGDCLGTLTKTFRASFLTFFDELSSYLTPMWGKDKAAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGG 298
            +V D L ++  +++   L +F++L   +  +    +   +R+  +CIFDD++EHC  A+ KY + ++  +L+   D  P+VRQAA YG+GV A+FGG
Sbjct:  841 KVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPQRPWPDRQWGLCIFDDIVEHCSPASFKYAEYFISPMLQYVCDNSPEVRQAAAYGLGVMAQFGG 937
[Close]
BLAST of CB610928 vs. ExPASy Swiss-Prot
Match: RNBP6_MOUSE (Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.290e-14
Identity = 35/97 (36.08%), Postives = 58/97 (59.79%), Query Frame = 2 
Query:    8 RVGDCLGTLTKTFRASFLTFFDELSSYLTPMWGKDKAAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGG 298
            +V D L +L  T++   L +F++L   +  +    +   +R+  +CIFDD++EHC   + KY + +   +L    D +P+VRQAA YG+GV A+FGG
Sbjct:  849 KVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGG 945
[Close]
BLAST of CB610928 vs. ExPASy Swiss-Prot
Match: RNBP6_HUMAN (Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.290e-14
Identity = 35/97 (36.08%), Postives = 58/97 (59.79%), Query Frame = 2 
Query:    8 RVGDCLGTLTKTFRASFLTFFDELSSYLTPMWGKDKAAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGG 298
            +V D L +L  T++   L +F++L   +  +    +   +R+  +CIFDD++EHC   + KY + +   +L    D +P+VRQAA YG+GV A+FGG
Sbjct:  849 KVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIFDDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGG 945
[Close]
BLAST of CB610928 vs. ExPASy Swiss-Prot
Match: IPO5_HUMAN (Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4)

HSP 1 Score: 75.8702 bits (185), Expect = 7.290e-14
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 2 
Query:    8 RVGDCLGTLTKTFRASFLTFFDELSSYLTPMWGKDKAAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDEHPDVRQAAVYGIGVCAEFGG 298
            +V D L ++  +++   L +F++L   +  +    +   +R+  +CIFDDV+EHC  A+ KY + +L  +L+   D  P+VRQAA YG+GV A++GG
Sbjct:  841 KVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIFDDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGG 937
The following BLAST results are available for this feature:
BLAST of CB610928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IPO5_MOUSE4.274e-1435.05Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3[more]
RNBP6_MOUSE7.290e-1436.08Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE... [more]
RNBP6_HUMAN7.290e-1436.08Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE... [more]
IPO5_HUMAN7.290e-1436.08Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4[more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_G04 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610928 ID=CB610928; Name=CB610928; organism=Citrus sinensis; type=EST; length=299bp
GGGTGACCGAGTTGGCGATTGCTTGGGAACATTGACCAAAACATTCAGAG
CCTCTTTCTTGACTTTCTTTGACGAGCTCTCTTCTTACTTGACACCTATG
TGGGGCAAGGATAAAGCAGCAGAAGAGAGGAGAATTGCCATTTGTATATT
CGATGATGTTATGGAGCACTGCCGTGAAGCTGCACTCAAATACTATGACA
CTTATCTTCCTTTCTTACTGGAAGCCTGCAATGACGAACATCCAGATGTT
CGTCAGGCTGCGGTTTATGGGATTGGAGTTTGTGCTGAGTTCGGTGGAT
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