CB610938

Overview
NameCB610938
Unique NameCB610938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610938_ssr70 microsatellite CB610938_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:2..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: UMPK_ARATH (Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.343e-80
Identity = 146/176 (82.95%), Postives = 160/176 (90.91%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEEGGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGFDA*SAV*SP 749
            LGGPGSGKGTQCA IVEH+GYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKA++E GNDKFLIDGFPRNEENRAAFE VT+IEP+FVLFFDC EEEME+R+L RNQGREDDN+ETIRKRFKVFLESSLPV+ YYEAKGKVR+I+A   +   F+   A+ SP
Sbjct:   20 LGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFSP 195          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KAD_PRUAR (Adenylate kinase OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.335e-56
Identity = 105/168 (62.50%), Postives = 132/168 (78.57%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEEGGNDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGFD 725
            LGGPGSGKGTQCA IVE FG+TH+SAGDLLR EI SGS  G++I + I+EGKIVPS+VT++L+QK ME   N KFLIDGFPR+EENR AFE     EP+ VLFFDC E+EM +R+LNRNQGR DDN++TI+KR ++F E + PV+ YY  +GK+ +I+A   V E F+
Sbjct:   53 LGGPGSGKGTQCAKIVEAFGFTHVSAGDLLRREIASGSAYGSVILSTIREGKIVPSQVTVELIQKEMESSDNYKFLIDGFPRSEENRKAFEQTIGAEPDVVLFFDCPEQEMVKRVLNRNQGRVDDNIDTIKKRLEIFDELNWPVINYYSQRGKLHKINAVGTVDEIFE 220          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KCY_DICDI (Cytidylate kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.492e-44
Identity = 93/172 (54.07%), Postives = 120/172 (69.77%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEEGGNDKFLIDGFPRNEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGFD 725
            LGGPGSGKGTQCANIV  FG+ HLSAGDLLR E +SGS++G MI  MIK G+IVPS VT+KLL+ A++      FL+DGFPRNEEN  ++E   K  ++ +FVLFFDC EE M +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A   V E ++
Sbjct:   13 LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYN 184          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KCY_CHICK (UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.375e-43
Identity = 94/178 (52.81%), Postives = 119/178 (66.85%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIK-SGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----GGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGFD 725
            LGGPG+GKGTQCA IVE +GYTHLSAGDLLR E K  GS+ G +I+N IKEG+IVP E+TI LL++AM++        +KFLIDGFPRNE+N   +      K +  FVLFFDC  E    R L R  + GR DDN E++ KR   +L+S+ P++  YE  GKVR +DA   V E F+
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGDLLRDERKRPGSQYGELIENYIKEGEIVPVEITISLLKRAMDQTMAANSQKNKFLIDGFPRNEDNLQGWNKTMDGKADVSFVLFFDCDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVDEVFE 186          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KCY_XENLA (UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.224e-42
Identity = 92/177 (51.98%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-----EGGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGF 722
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++GKIVP E+TI LLQ+AME     +    KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R  + GR DDN E++ KR + +L+S+ P++  YE +GKVR++DA   V E F
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGKIVPVEITISLLQRAMERTMAFDANKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKRGKVRKVDASKSVDEVF 185          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KCY_XENTR (UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.728e-42
Identity = 91/177 (51.41%), Postives = 119/177 (67.23%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAME-----EGGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGF 722
            LGGPG+GKGTQC  IV+ +GYTHLSAGDLLR E K   S+ G +I++ I++G+IVP E+TI LLQ+AME     +G   KFLIDGFPRNE+N   +E     K +  FVLFFDC  E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GKV+++DA   V E F
Sbjct:    9 LGGPGAGKGTQCERIVQKYGYTHLSAGDLLRDERKKPDSQYGELIESYIRDGRIVPVEITISLLQRAMEQTMALDGNKHKFLIDGFPRNEDNLQGWERTMNGKADVSFVLFFDCDNETCIERCLERGKSSGRSDDNRESLEKRIQTYLQSTRPIIDLYEKTGKVKKVDASKSVDEVF 185          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KCY_HUMAN (UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 91/178 (51.12%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----GGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGFD 725
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IKEGKIVP E+TI LL++ M++        +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GKV++IDA   V E FD
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFD 186          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KCY_DANRE (UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 94/177 (53.11%), Postives = 122/177 (68.93%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAE-IKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----GGNDKFLIDGFPRNEENRAAF--EAVTKIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGF 722
            LGGPG+GKGTQCA IVE++ YTHLSAGDLLR E  ++ SE G +I + IKEGKIVP ++TI LL+KAMEE         +FLIDGFPRN++N   +  E   K + +FVLFFDCS E    R L R  + GR DDN E++ KR + +L+S+ P+++ YE +GKV+ IDA   V E F
Sbjct:    9 LGGPGAGKGTQCARIVENYSYTHLSAGDLLREERSRTDSEFGQLIDSYIKEGKIVPVQITINLLRKAMEETMKADEKKFRFLIDGFPRNQDNLQGWNTEMDGKADVKFVLFFDCSNEVCIDRCLERGKSSGRTDDNRESLEKRIQTYLQSTRPIIELYEKQGKVQRIDASRSVDEVF 185          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KCY_BOVIN (UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.768e-41
Identity = 91/178 (51.12%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----GGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGFD 725
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M++        +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GKVR+IDA   V E FD
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVRKIDASKSVDEVFD 186          
BLAST of CB610938 vs. ExPASy Swiss-Prot
Match: KCY_PIG (UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.939e-41
Identity = 90/178 (50.56%), Postives = 120/178 (67.42%), Query Frame = 3
Query:  222 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKS-GSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEE-----GGNDKFLIDGFPRNEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNR--NQGREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVREIDAGSIVAEGFD 725
            LGGPG+GKGTQCA IVE +GYTHLSAG+LLR E K+  S+ G +I+  IK+GKIVP E+TI LL++ M++        +KFLIDGFPRN++N   +      K +  FVLFFDC+ E    R L R  + GR DDN E++ KR + +L+S+ P++  YE  GKV++IDA   V E FD
Sbjct:    9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKDGKIVPVEITISLLRREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFD 186          
The following BLAST results are available for this feature:
BLAST of CB610938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
UMPK_ARATH7.343e-8082.95Uridylate kinase OS=Arabidopsis thaliana GN=PYR6 P... [more]
KAD_PRUAR4.335e-5662.50Adenylate kinase OS=Prunus armeniaca PE=2 SV=1[more]
KCY_DICDI6.492e-4454.07Cytidylate kinase OS=Dictyostelium discoideum GN=p... [more]
KCY_CHICK9.375e-4352.81UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1[more]
KCY_XENLA1.224e-4251.98UMP-CMP kinase OS=Xenopus laevis GN=cmpk1 PE=2 SV=... [more]
KCY_XENTR2.728e-4251.41UMP-CMP kinase OS=Xenopus tropicalis GN=cmpk1 PE=2... [more]
KCY_HUMAN1.768e-4151.12UMP-CMP kinase OS=Homo sapiens GN=CMPK1 PE=1 SV=3[more]
KCY_DANRE1.768e-4153.11UMP-CMP kinase OS=Danio rerio GN=cmpk1 PE=2 SV=2[more]
KCY_BOVIN1.768e-4151.12UMP-CMP kinase OS=Bos taurus GN=CMPK1 PE=2 SV=2[more]
KCY_PIG3.939e-4150.56UMP-CMP kinase OS=Sus scrofa GN=CMPK1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610938 ID=CB610938; Name=CB610938; organism=Citrus sinensis; type=EST; length=750bp
GGGGAACAACAAAAAAACTAACATTGGCAATTGGCATCCCTCTGCCTTCT
TTCTTTCCCTCCATATTCTTCTCTCTCTCTCCAAACAAAACAACGCTCGC
AATTCGCTAAGATCGGTTATTCAGACTGAGTTAGTTGGCGCTGATGGGAA
CTGTGGTTGAAACTCCTGTCAAGGAAGCAGATGCTACCGTAACTGTGAAG
AAGCCCACTGTTGTTTTTGTTTTGGGTGGACCAGGCAGTGGAAAAGGAAC
CCAGTGCGCAAACATTGTTGAACACTTTGGATACACCCATCTCAGTGCTG
GTGATCTTCTCAGAGCCGAAATCAAATCTGGCTCTGAAAATGGAACCATG
ATTCAGAACATGATTAAAGAGGGAAAAATCGTTCCTTCAGAGGTCACAAT
TAAGCTTCTCCAAAAAGCAATGGAGGAAGGTGGAAATGATAAATTTCTCA
TCGATGGTTTTCCCAGGAACGAGGAAAATCGTGCTGCATTTGAAGCTGTT
ACCAAAATTGAGCCAGAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGA
GATGGAGAGGCGCATTTTGAATAGGAATCAGGGAAGAGAAGATGATAACG
TTGAGACAATTAGGAAGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCT
GTGGTTCAATATTATGAAGCTAAGGGTAAAGTTCGGGAGATTGATGCTGG
ATCGATTGTTGCAGAGGGTTTTGATGCTTGATCAGCTGTTTGATCCCCCA
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