CB610943

Overview
NameCB610943
Unique NameCB610943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6849 contig Csv1_Contig6849:250..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.147e-54
Identity = 101/140 (72.14%), Postives = 116/140 (82.86%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLXDALTNAPSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            MSL+PS FGGRRTNVFDPFSLDVWDPF+GFL   LTNAP  A++ + F NAK+DW+ETP+ HVFKAD+PGL+          G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVT 138          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 4.821e-53
Identity = 103/141 (73.05%), Postives = 116/141 (82.27%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLXDA-LTNAPSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            MSLIPSIFGGRRTNVFDPFSLDV+DPF+GFL  + L NAP  A + + F NAK+DW+ETP+ HVFKADLPGLR          G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVT 139          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 5.330e-52
Identity = 99/141 (70.21%), Postives = 116/141 (82.27%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLX--DALTNAPSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 490
            MSLIPSIFGGRR+NVFDPFS D+WDPF+GF     AL NA S+AR+ + F NA++DWKETP+ HVFKADLPGL+            +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTV 140          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.005e-50
Identity = 96/140 (68.57%), Postives = 112/140 (80.00%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLXDALTNAPSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            MS+IPS FGGRR+NVFDPFSLDVWDPF  F     ++A    +ET+ F N  IDWKETPQ HVFKADLPGL+          G++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPL-VTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVT 139          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.452e-49
Identity = 98/158 (62.03%), Postives = 116/158 (73.42%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGF-LXDALTNA--PSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIE 538
            MSLIP+ FGGRR NVFDPFSLDVWDPF  F   + L++A  P  +RE S F + ++DWKETP+ HVFKAD+PGL+           ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT            AIE
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIE 158          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.896e-49
Identity = 92/140 (65.71%), Postives = 111/140 (79.29%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLXDALTNAPSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            MSLIPS FGGRR+NVFDPFSLDVWDPF  F  +    + S  RE S F + ++DWKETP+ HVFKADLPG++           R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVT 140          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.409e-49
Identity = 98/156 (62.82%), Postives = 114/156 (73.08%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLXDALTNAPSS-ARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIE 538
            MSLIPSIFGGRR+NVFDPFSLDVWDPF  F      + P+S + E S F N ++DWKETP+ HVF+AD+PGL+           R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT            AIE
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIE 150          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.738e-48
Identity = 92/140 (65.71%), Postives = 108/140 (77.14%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLXDALTNAPSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            MSLIPS F GRR+NVFDPFSLDVWDP   F     + + S  RE   F + ++DWKETP+ HVFKADLPGL+           R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVT 140          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.040e-47
Identity = 92/140 (65.71%), Postives = 110/140 (78.57%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLXDALTNAPSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            MSLIPS FGGRR++VFDPFSLDVWDPF  F   +  +A +SA     F + ++DWKETP+ HVFKAD+PGL+          GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSAENSA-----FVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVT 135          
BLAST of CB610943 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.359e-47
Identity = 91/141 (64.54%), Postives = 109/141 (77.30%), Query Frame = 2
Query:   74 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGF-LXDALTNAPSSARETSQFANAKIDWKETPQVHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 493
            MS+IPS FG RR+NV +PFSLD+WDPF  + L  +   +    +ET+ FAN  IDWKETPQ HVFKADLPGL+          G++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVT 141          
The following BLAST results are available for this feature:
BLAST of CB610943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP17_ARATH1.147e-5472.1417.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH4.821e-5373.0517.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS181_ARATH5.330e-5270.2118.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_DAUCA1.005e-5068.5717.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN1.452e-4962.0318.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA1.896e-4965.7118.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP13_SOYBN9.409e-4962.8217.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.738e-4865.7118.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_SOYBN1.040e-4765.7117.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_DAUCA1.359e-4764.5418.0 kDa class I heat shock protein OS=Daucus caro... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_D02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610943 ID=CB610943; Name=CB610943; organism=Citrus sinensis; type=EST; length=587bp
GGGGATCTTCGAATTGATTGATCAAACACTTCTGAAGTTGTTGAGCATTT
AATTGGNNCCCCAGTTTGCCATAATGTCACTCATTCCGAGCATCTTCGGT
GGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCC
TTTCGACGGGTTCTTGTNCGATGCCCTTACCAACGCGCCGTCTTCGGCTA
GGGAAACATCCCAATTCGCCAATGCAAAAATTGACTGGAAAGAGACTCCT
CAGGTTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGT
GAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGGA
GCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGC
AGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGA
GCAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCTA
AACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAA
GTGATAAGTGTAAATGTTTTCNNAATTGTGTCTTTGG
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