CB610944

Overview
NameCB610944
Unique NameCB610944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610944_ssr6 microsatellite CB610944_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB610944 vs. ExPASy Swiss-Prot
Match: CKX5_ARATH (Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana GN=CKX5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.140e-27
Identity = 72/129 (55.81%), Postives = 91/129 (70.54%), Query Frame = 1
Query:  136 ASKLLLTFAICRLIVTVGLTMDPTELLRLG---VYGQLSVDPSDVQTASLDFGML-SRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTS-NGVVIQMS-------GPLLSPD 486
            +S LLLTFAIC+LI+ VGL + P+ELLR+G   V G  +V PSD+ + S DFGML S  EP AVLHP+SA+D+ R+V+ AY S A  F +SARGHGHSINGQA    NGVV++M+        PL+ PD
Sbjct:    7 SSFLLLTFAICKLIIAVGLNVGPSELLRIGAIDVDGHFTVHPSDLASVSSDFGMLKSPEEPLAVLHPSSAEDVARLVRTAYGS-ATAFPVSARGHGHSINGQAAAGRNGVVVEMNHGVTGTPKPLVRPD 134          
BLAST of CB610944 vs. ExPASy Swiss-Prot
Match: CKX3_ARATH (Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana GN=CKX3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.140e-12
Identity = 37/96 (38.54%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  178 VTVGLTMDPTELLRLGVY-GQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQM 462
            +T   +  P  +L    + G+L+   S V++A+ DFG +++  P AVL P+S +DIT ++K +++S+   F ++ARGHGHS  GQA   +GVV+ M
Sbjct:   27 ITTNTSPQPWNILSHNEFAGKLTSSSSSVESAATDFGHVTKIFPSAVLIPSSVEDITDLIKLSFDSQL-SFPLAARGHGHSHRGQASAKDGVVVNM 121          
BLAST of CB610944 vs. ExPASy Swiss-Prot
Match: CKX2_ARATH (Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana GN=CKX2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 1
Query:  133 MASKLLLTFAICRLIVTV---GLTMDPTELLRLGVYGQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMS 465
            MA+  L+   I  L++T    G+ +D  + L L     LS DPS +  AS DFG ++   P  V+ P+S  DI+R+++ A   ++  F ++ARG GHS+NGQA  S GV++ M+
Sbjct:    1 MANLRLMITLITVLMITKSSNGIKIDLPKSLNL----TLSTDPSIISAASHDFGNITTVTPGGVICPSSTADISRLLQYAANGKST-FQVAARGQGHSLNGQASVSGGVIVNMT 109          
BLAST of CB610944 vs. ExPASy Swiss-Prot
Match: CKX1_MAIZE (Cytokinin dehydrogenase 1 OS=Zea mays GN=CKX1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.682e-11
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  202 PTELLRLGVYGQLSVDPSDVQTASLDFGMLSRAEPWAVLHPASADDITRVVKAAYESEAHGFTISARGHGHSINGQAQTSNGVVIQMS 465
            P  L  L + G+L  D +    AS DFG ++ A P AVL+P+S  D+  ++ AA  +    +TI+ RG GHS+ GQA    GVV+ M+
Sbjct:   35 PASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMA 122          
The following BLAST results are available for this feature:
BLAST of CB610944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CKX5_ARATH1.140e-2755.81Cytokinin dehydrogenase 5 OS=Arabidopsis thaliana ... [more]
CKX3_ARATH5.140e-1238.54Cytokinin dehydrogenase 3 OS=Arabidopsis thaliana ... [more]
CKX2_ARATH1.495e-1137.72Cytokinin dehydrogenase 2 OS=Arabidopsis thaliana ... [more]
CKX1_MAIZE5.682e-1139.77Cytokinin dehydrogenase 1 OS=Zea mays GN=CKX1 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0002_IIIaF_D03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0002_IIIaF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610944 ID=CB610944; Name=CB610944; organism=Citrus sinensis; type=EST; length=652bp
GGGGATTTCTTTCTTTCTATGTACCAAACAAAAACAAAAACAAAAGATAA
AACAAAAACAATTTTTTGCGTTCTGTGTTGGTGCTGTTTGAACTACCTAG
CTATTAAGCTGGCCGAGAAGGAATTACTCGGTATGGCGAGTAAGCTTCTT
CTAACTTTTGCTATTTGTAGATTAATCGTTACCGTAGGATTGACAATGGA
CCCCACGGAGCTCCTCCGCCTCGGAGTCTACGGTCAACTAAGCGTCGACC
CATCCGACGTGCAAACAGCTTCCCTCGACTTTGGTATGTTAAGCCGGGCC
GAGCCTTGGGCAGTTTTGCACCCAGCTTCAGCGGATGATATTACTCGGGT
GGTCAAAGCGGCCTATGAGTCGGAGGCTCATGGTTTTACAATCTCGGCCA
GGGGTCATGGCCATTCTATTAACGGACAGGCACAAACAAGTAATGGGGTT
GTGATTCAGATGAGCGGCCCACTGTTGTCCCCGGATTTTGTCTGTAGGCT
TCATCACACAGCCGGTTCCAGTTCCATCCTGTTTGGTCTGGCGATTTACT
GTGTTAGTATTTTACCCCACCCTATCATTATCAGTAGCTCCTTGTTCCTT
GCAGTTGCATCTGAACGAGAACAACTTTGTAAATATAATCAAGGTAGTTA
AC
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