CB610969

Overview
NameCB610969
Unique NameCB610969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:1..592. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 4.770e-56
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSLF 383
            MVNVPKTKKTY KSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGK TSLF
Sbjct:    1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 1.876e-52
Identity = 96/105 (91.43%), Postives = 99/105 (94.29%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSLF 383
            MVN+PKTK TY K+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGK TSLF
Sbjct:    1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.032e-42
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVNVPKT++TY K K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK K  ++
Sbjct:    1 MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKGAAI 104          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_CRYNE (60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 1.760e-42
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVN+PKT++TY K K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +  ++
Sbjct:    1 MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRGAAI 104          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 3.920e-42
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVN+PKT++TY K K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK K  +L
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.920e-42
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVN+PKT++TY K K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK K  +L
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKGAAL 104          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.120e-42
Identity = 81/104 (77.88%), Postives = 89/104 (85.58%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVNVPKT++TY K KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK K  +L
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKGQAL 104          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_PICCI (60S ribosomal protein L44 OS=Pichia ciferrii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.120e-42
Identity = 81/104 (77.88%), Postives = 89/104 (85.58%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVNVPKT+KTY K KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGD+K K  +L
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKGQAL 104          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_DEBHA (60S ribosomal protein L44 OS=Debaryomyces hansenii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.490e-41
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVNVPKT++TY K KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK K  +L
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQKGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKGQAL 104          
BLAST of CB610969 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.945e-41
Identity = 79/104 (75.96%), Postives = 88/104 (84.62%), Query Frame = 3
Query:   69 MVNVPKTKKTYRKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKETSL 380
            MVNVPKT+KTY K K+C+KHT HKVTQYK GK SL +QGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK K  +L
Sbjct:    1 MVNVPKTRKTYCKGKQCKKHTQHKVTQYKAGKASLYSQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKGAAL 104          
The following BLAST results are available for this feature:
BLAST of CB610969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_GOSHI4.770e-5698.1060S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH1.876e-5291.4360S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH1.032e-4275.9660S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CRYNE1.760e-4275.9660S ribosomal protein L44 OS=Cryptococcus neoforma... [more]
RL44_COPCI3.920e-4275.0060S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC73.920e-4275.0060S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_PICJA5.120e-4277.8860S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_PICCI5.120e-4277.8860S ribosomal protein L44 OS=Pichia ciferrii GN=RP... [more]
RL44_DEBHA1.490e-4176.9260S ribosomal protein L44 OS=Debaryomyces hansenii... [more]
RL44_CANGY1.945e-4175.9660S ribosomal protein L44 OS=Candida glycerinogene... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_H01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610969 ID=CB610969; Name=CB610969; organism=Citrus sinensis; type=EST; length=595bp
GGGGGTTACCCTTCGGCAGCAGTTGGAAGTTACGAAGAGCTCTCTCGTCG
TCGCCGCAGCCGGCCATCATGGTGAATGTTCCCAAGACTAAGAAGACTTA
CCGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTGACACAGT
ACAAGAAGGGCAAGGACAGTCTTGCTGCTCAAGGGAAGAGACGGTATGAT
CGCAAGCAGTCTGGCTATGGCGGTCAGACCAAGCCTGTCTTCCACAAGAA
GGCTAAGACCACCAAGAAGATTGTGCTGAGGCTCCAATGCCAGGGTTGCA
AGCATGTGTCTCAACATCCCATCAAGAGGTGCAAGCACTTTGAAATTGGT
GGAGACAAGAAGGGAAAGGAAACATCTCTTTTCTAAATGCCTTTATTTTT
GTTTTTATGCTTTTTACTTTGCTGCACTTGATGGAACATTGCCCAGTATG
AGAATATTTGTTTTAGTTTTGTTGGGTTAGTTTGATGCTGTTAATTTAAA
ACTTGAAGCGGTTGTTTGTTAAGTGCTTATTATATCAGTTAATTTTATAT
TTGGATTTTTTTTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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