CB610984

Overview
NameCB610984
Unique NameCB610984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12241 contig Csv1_Contig12241:181..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB610984 vs. ExPASy Swiss-Prot
Match: HPPD_ARATH (4-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.841e-20
Identity = 50/69 (72.46%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 DQGTLLQIFTKPVGDRPTIFIEIIQRVGCTLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAK 210
            DQGTLLQIFTKP+GDRPTIFIEIIQRVGC +KDEE               NFSELFKSIEEYEKTL AK
Sbjct:  373 DQGTLLQIFTKPLGDRPTIFIEIIQRVGCMMKDEEGKAYQSGGCGGFGKGNFSELFKSIEEYEKTLEAK 441
[Close]
BLAST of CB610984 vs. ExPASy Swiss-Prot
Match: HPPD_DAUCA (4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.118e-19
Identity = 49/71 (69.01%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 DQGTLLQIFTKPVGDRPTIFIEIIQRVGCTLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAKPV 216
            DQGTLLQIFTKPVGDRPT+FIEIIQRVGC LKD+                NFSELFKSIEEYEKTL AK +
Sbjct:  366 DQGTLLQIFTKPVGDRPTLFIEIIQRVGCMLKDDAGQMYQKGGCGGFGKGNFSELFKSIEEYEKTLEAKQI 436
[Close]
BLAST of CB610984 vs. ExPASy Swiss-Prot
Match: HPPD_SOLSC (4-hydroxyphenylpyruvate dioxygenase OS=Solenostemon scutellarioides PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.490e-19
Identity = 49/71 (69.01%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 DQGTLLQIFTKPVGDRPTIFIEIIQRVGCTLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAKPV 216
            DQGTLLQIFTKPVGDRPT+FIEIIQRVGC +KDEE               NFSELFKSIEEYEK L +K V
Sbjct:  360 DQGTLLQIFTKPVGDRPTLFIEIIQRVGCMMKDEEGKMYQKGGCGGFGKGNFSELFKSIEEYEKMLESKLV 430
[Close]
BLAST of CB610984 vs. ExPASy Swiss-Prot
Match: HPPD_HORVU (4-hydroxyphenylpyruvate dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    4 DQGTLLQIFTKPVGDRPTIFIEIIQRVGCTLKDEEXXXXXXXXXXXXXXXNFSELFKSIEEYEKTLGAK 210
            DQG LLQIFTKPVGDRPT+F+E+IQR+GC  KDE                NFSELFKSIE+YEK+L AK
Sbjct:  358 DQGVLLQIFTKPVGDRPTLFLEMIQRIGCMEKDERGEEYQKGGCGGFGKGNFSELFKSIEDYEKSLEAK 426
The following BLAST results are available for this feature:
BLAST of CB610984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HPPD_ARATH3.841e-2072.464-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis... [more]
HPPD_DAUCA1.118e-1969.014-hydroxyphenylpyruvate dioxygenase OS=Daucus caro... [more]
HPPD_SOLSC2.490e-1969.014-hydroxyphenylpyruvate dioxygenase OS=Solenostemo... [more]
HPPD_HORVU5.191e-1762.324-hydroxyphenylpyruvate dioxygenase OS=Hordeum vul... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_G01 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610984 ID=CB610984; Name=CB610984; organism=Citrus sinensis; type=EST; length=564bp
GGGGATCAAGGTACCCTCCTACAGATTTTCACTAAGCCTGTTGGAGATAG
GCCAACCATTTTTATAGAGATAATTCAGAGAGTAGGATGCACGCTTAAGG
ATGAGGAAGGAAAGACGTATCAGAAGGGAGGATGCGGGGGATTTGGAAAG
GGCAACTTTTCGGAACTTTTCAAGTCCATTGAGGAATATGAGAAGACACT
TGGAGCAAAACCAGTTGCCGAGACAGCTGCTGCATGAATAGAGACGGCAT
TTCTGAACTTATCTTTGCGCCATAATGCAGTTATATAAGGTTGCTACCTT
GAGAATTCATTACAGTATGATATCATATAATTTATCAGAAAGCTTGGTAA
TTGTTCCTGTGCAAACTTTCTGGAACAACTACCATACAAAAAATTACTTG
AAAAGTAAATATTATGATGTACATTGTATAACAGCTGGACTTTAGCAGCT
TAGGCAGTCTGTGATATGTACATGTCCATCTGTTGAGGATGGACTCAAAT
TTAAGTTTCTATGATCATATTCTCTGTTCTTTACAGAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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