CB610992

Overview
NameCB610992
Unique NameCB610992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610992 vs. ExPASy Swiss-Prot
Match: CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica GN=CML11 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.418e-27
Identity = 60/96 (62.50%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  350 LDDDQIAELREIFRSFDRNNDXXXXXXXXXXXXXXXXXKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRHLFRMFDRDG 637
            L DDQ+ ELREIFRSFDRN D                 KPS D+L++LIQ+ADTNSNGL+EFSEFVALVAPELL  ++PYSE+Q+R LF +FDRDG
Sbjct:   57 LGDDQLGELREIFRSFDRNGDGSLTQLELGSLLRSLGLKPSTDELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPYSEDQIRRLFNIFDRDG 152          
BLAST of CB610992 vs. ExPASy Swiss-Prot
Match: CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana GN=CML17 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 65/107 (60.75%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  326 MSNK*PMNLDDDQIAELREIFRSFDRNNDXXXXXXXXXXXXXXXXXKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLS---SKSPYSEEQLRHLFRMFDRDG 637
            MS+K    LD++QI ELREIFRSFDRN D                 KPSPDQ ETLI KADT SNGLVEF EFVALV+PELLS     +PY+EEQL  LFR+FD DG
Sbjct:    1 MSHKVSKKLDEEQINELREIFRSFDRNKDGSLTQLELGSLLRALGVKPSPDQFETLIDKADTKSNGLVEFPEFVALVSPELLSPAKRTTPYTEEQLLRLFRIFDTDG 107          
BLAST of CB610992 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 59/99 (59.60%), Postives = 71/99 (71.72%), Query Frame = 2
Query:  341 PMNLDDDQIAELREIFRSFDRNNDXXXXXXXXXXXXXXXXXKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRHLFRMFDRDG 637
            P  L D+Q+AELREIFRSFD+N D                 KPS DQL+TLIQKAD N+NGLVEFSEFVALV P+L+  K PY+++QL+ +FRMFDRDG
Sbjct:   10 PAKLGDEQLAELREIFRSFDQNKDGSLTELELGSLLRSLGLKPSQDQLDTLIQKADRNNNGLVEFSEFVALVEPDLV--KCPYTDDQLKAIFRMFDRDG 106          
BLAST of CB610992 vs. ExPASy Swiss-Prot
Match: CML14_ORYSJ (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica GN=CML14 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 36/99 (36.36%), Postives = 48/99 (48.48%), Query Frame = 2
Query:  341 PMNLDDDQIAELREIFRSFDRNNDXXXXXXXXXXXXXXXXXKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRHLFRMFDRDG 637
            P  L   Q+ +LRE+FR FD N D                 +P+ D++  L+   D N NG VEF E  A +AP L +      + QL  +FR FDRDG
Sbjct:   15 PQQLRGSQLKQLRELFRRFDMNGDGSLTQLELAALLRSLGLRPTGDEVHALLAGMDANGNGSVEFDELAAAIAPVLTTQTHLVDQAQLLEVFRAFDRDG 113          
BLAST of CB610992 vs. ExPASy Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  347 NLDDDQIAELREIFRSFDRNNDXXXXXXXXXXXXXXXXXKPSPDQLETLIQKADTNSNGLVEFSEFVALVAPELLSSKSPYSEEQLRHLFRMFDRDG 637
            NL D+QIAE RE F  FDR+ D                  P+  +L+ +I + D + NG ++F+EF+ ++A ++   K   +EE++R  F++FD+DG
Sbjct:    5 NLTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKM---KDTDNEEEVREAFKVFDKDG 98          
The following BLAST results are available for this feature:
BLAST of CB610992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CML11_ORYSJ2.418e-2762.50Probable calcium-binding protein CML11 OS=Oryza sa... [more]
CML17_ARATH4.560e-2660.75Probable calcium-binding protein CML17 OS=Arabidop... [more]
CML18_ARATH3.860e-2559.60Probable calcium-binding protein CML18 OS=Arabidop... [more]
CML14_ORYSJ1.090e-1136.36Probable calcium-binding protein CML14 OS=Oryza sa... [more]
CALM_SCHPO7.068e-1134.02Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610992 ID=CB610992; Name=CB610992; organism=Citrus sinensis; type=EST; length=638bp
GGGGGTTGTTGAGTCTTCATATCGGATCCGATAATTGGGTCTCAGTCGCC
GGTAATTCGGAGGATCCAACGAAATTGGAGGGATAAATCAAGAACGATTT
TCGAGGCAATCTTGGATCTTTCAACTTCACTCTTTTATAATCAAGAATCT
TAACAGATCATCATAGAATAATAACAATGGCTACTGAATCATCAGGTTTT
GATCCAAACCCACGATCTTTTTCTCCTTCATTTTCTTCATTTTCAACCTT
TTCTTAATCTTTAGGATTCATTAGATTAGGGTTAGGGTTCAGTGTAATTA
TTGTGGTTAAAAAATACATTATAATATGAGCAACAAGTAACCGATGAATC
TAGACGACGATCAAATAGCGGAGCTACGTGAAATCTTTCGTTCATTTGAT
CGGAACAACGACGGGAGCCTCACACAGCTCGAGTTAGGCTCACTGTTGCG
TTCTTTAGGGCTGAAGCCGAGCCCCGACCAGCTGGAAACCCTAATTCAGA
AGGCGGATACTAACAGCAACGGTCTCGTGGAGTTCTCGGAGTTCGTGGCG
CTGGTGGCTCCAGAGCTGCTCTCGTCGAAGTCACCCTACAGTGAGGAGCA
GCTGAGGCATCTGTTCAGGATGTTTGATAGGGACGGTA
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