CB610996

Overview
NameCB610996
Unique NameCB610996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2549 contig Csv1_Contig2549:638..1283. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.099e-42
Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = 2
Query:    5 GLKCSPNFQASM--AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            GLKCS N   +   AVYK+KL+GP G+E EFE Q+DQYILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDGSFL+D+ +E GY+LTC++YP SDCVI +HKE EL
Sbjct:   45 GLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 80/108 (74.07%), Postives = 91/108 (84.26%), Query Frame = 2
Query:    8 LKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            LK S     S MAVYK+KL+GP+GEEHEF+A +D YILDAAE AGV+LPYSCRAGACSTCAGK+ SGSVDQSDGSFLDD Q E GY+LTC+SYP SDCVI +HKE +L
Sbjct:   44 LKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.172e-39
Identity = 72/96 (75.00%), Postives = 87/96 (90.62%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            AVYK+KLIGP+GEE+EFE Q+DQ+ILDAAEEAGVDLPYSCRAGACSTCAG++V G VDQS+GSFL+D+  E G++LTC++YP SDCVI +HKE EL
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.839e-38
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 2
Query:   41 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            AVYK+KLIGP G+E+EF+  +DQYILDAAEEAGVDLPYSCRAGACSTCAGK+  G VDQSDGSFL+D+  E GY+LTC++YP SD VI +HKEEEL
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.556e-37
Identity = 73/110 (66.36%), Postives = 90/110 (81.82%), Query Frame = 2
Query:    5 GLKCSPNFQASMA--VYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            G + S  F AS A  ++K+KL+GP G EHEFEA +D YIL+AAE AGV+LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM  GYLLTCISYP +DCVI +HKEE+L
Sbjct:   45 GPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 7.724e-37
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = 2
Query:   38 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA YK+ LI   +G     E  +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.834e-36
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA Y +KLI P GE +  E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.007e-36
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = 2
Query:   38 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA Y +KLI P GE    E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGES-SIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER_NOSMU (Ferredoxin OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.457e-35
Identity = 70/98 (71.43%), Postives = 85/98 (86.73%), Query Frame = 2
Query:   38 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            MA +K+ LI   +G +HE E  +D+YILDAAEE G DLP+SCRAGACSTCAGKLVSG+VDQSD SFLDD+Q+EAGY+LTC++YPTSD VIQ+HKEE+L
Sbjct:    1 MATFKVTLINEAEGTKHEIEVPDDEYILDAAEEEGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEEDL 98          
BLAST of CB610996 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.457e-35
Identity = 68/98 (69.39%), Postives = 85/98 (86.73%), Query Frame = 2
Query:   35 SMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 328
            +MA YK+K I P+GE+ E E +ED Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD QM  GY+LTC++YPTSD VI++HKEE +
Sbjct:   51 AMATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
The following BLAST results are available for this feature:
BLAST of CB610996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_ARATH2.099e-4272.73Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE1.777e-4174.07Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER2_RAPSA2.172e-3975.00Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER1_RAPSA1.839e-3875.00Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE1.556e-3766.36Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_MASLA7.724e-3773.47Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER_SYNY43.834e-3672.16Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY35.007e-3672.16Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_NOSMU1.457e-3571.43Ferredoxin OS=Nostoc muscorum PE=1 SV=2[more]
FER1_ARATH1.457e-3569.39Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610996 ID=CB610996; Name=CB610996; organism=Citrus sinensis; type=EST; length=646bp
GGGTGGCCTGAAATGCTCTCCCAATTTCCAAGCATCAATGGCTGTCTACA
AGATTAAGCTGATTGGACCTAAGGGTGAAGAGCATGAGTTTGAGGCCCAG
GAAGACCAGTACATCCTCGATGCAGCTGAGGAAGCAGGAGTCGACCTGCC
CTATTCCTGCCGCGCTGGTGCTTGCTCGACGTGTGCTGGGAAGTTGGTGT
CTGGTTCAGTTGACCAGTCAGATGGTTCCTTCCTCGATGACAATCAAATG
GAGGCTGGTTATCTGCTGACTTGCATTTCATACCCGACTTCAGATTGCGT
GATTCAGTCTCACAAGGAAGAAGAGCTTTGCTGAGTGCCTTTGCTGTCAG
TTGGTTTAGGGTTTTTCAAGTATGAACTGTGATCAAGTGCCTGAGTATGC
TGATAAGGTTTCTCATGGGCCTACAATATTTTTTAGATTTCAGCGTGTTG
TCTGGTGCAATGGAATCTGTAATTTTTCATTTAGTTATACTATTACTGGC
ATTTTGGGATTTCATTTCATGTGAAAGGGTGTATAATTTCTCAAAATAAG
ATAATTACCCCCGAGCAGGGCCTAAATCGATCGGCCCTCACAAGTTGAAC
CATGCGCCGATCGATTTAAAAATGCAATTGAAAGATCNTGGTTGCC
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