CB610997

Overview
NameCB610997
Unique NameCB610997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:906..1423. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.450e-42
Identity = 78/110 (70.91%), Postives = 94/110 (85.45%), Query Frame = 1
Query:   82 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            AEEGQVI CHTVE+WNEQLQKG   K LIVVDFTASWC PC+ ++P L+ELAKKLP V FLKVDVDELK+VA EWAVE+MPTF+  KEGK+++++VGAKK++LQ  + KH
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 9.314e-41
Identity = 77/111 (69.37%), Postives = 93/111 (83.78%), Query Frame = 1
Query:   79 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            MAEEGQVI  HTV++WNE LQKGI  KKLIVVDFTASWC PCK ++   +ELAKK+P V FLKVDVDELKSVA +WAVEAMPTF+  KEGK+++++VGAKK++LQ  + KH
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.075e-40
Identity = 72/110 (65.45%), Postives = 94/110 (85.45%), Query Frame = 1
Query:   82 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            +EEGQVI+CHTVE+WNEQLQK   +K L+VVDFTASWC PC+ ++P  ++LAKKLP V+FLKVD DELKSVA +WA++AMPTF+  KEGK+L+++VGAKK++LQ  + KH
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.294e-39
Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = 1
Query:   82 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            +EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC+ ++PIL+++AKK+P VIFLKVDVDELK+V+ EW+VEAMPTFV  K+GK ++R+VGAKK +LQ  + KH
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKH 118          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.625e-35
Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = 1
Query:   79 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            MAEE QVI+CHTV+ WNE+ QK   + KLIV+DFTASWC PC++++P +SELAKK P V F KVDVD+LK VAEE+ VEAMP+FV+ KEG+ +ERIVGA+K++L   +  H
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.303e-34
Identity = 62/111 (55.86%), Postives = 90/111 (81.08%), Query Frame = 1
Query:   79 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            MA EG+VI+CHT+E WNE+++    +KKLIV+DFTASWCPPC+ ++P+ +E+AKK   V+F K+DVDEL++VA+E+ VEAMPTFV  KEG +++R+VGA K+++   + KH
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 67/111 (60.36%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   82 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            AEEGQVI CHT + W  QL K   + KLIV+DFTASWCPPC++++PI ++LAKK + + IF KVDVDEL+SVA+E+ VEAMPTFV  K G+V++++VGA K DLQ  + KH
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.440e-33
Identity = 63/111 (56.76%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   79 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            MA EG+VI+CHTVE W E+L+    +KKLIV+DFTA+WCPPC+ ++P+ ++LAKK   V+F KVDVDEL +VAEE+ V+AMPTF+  KEG++ E +VGA K ++   +EKH
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.209e-33
Identity = 63/111 (56.76%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   82 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            AEEGQVI CH ++ W  QL     + KLIV+DFTASWCPPC++++P+ ++LAKK + + IF KVDVDEL++VA+E+ VEAMPTFVL K+G V++++VGA+K DL   + KH
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKH 113          
BLAST of CB610997 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 7.148e-33
Identity = 63/107 (58.88%), Postives = 85/107 (79.44%), Query Frame = 1
Query:   91 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKNDLQLAVEKH 411
            G+VIS H++E W  Q+++  AAKKL+V+DFTASWC PC++M+PI ++LAKK PA +FLKVDVDELK +AE+++VEAMPTF+  KEG V +R+VGA K +L   V  H
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLH 124          
The following BLAST results are available for this feature:
BLAST of CB610997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
TRXH_RICCO6.450e-4270.91Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC9.314e-4169.37Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH2.075e-4065.45Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC2.294e-3964.55Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES2.625e-3562.16Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH1.303e-3455.86Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH8.444e-3460.36Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH1.440e-3356.76Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA3.209e-3356.76Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_WHEAT7.148e-3358.88Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_E09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610997 ID=CB610997; Name=CB610997; organism=Citrus sinensis; type=EST; length=518bp
NCGGCCGGGGACCAAACACAGAACCGATTATAAAGAAATCAGAACAGAGA
AGTAATTTAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGA
TCAGCTGCCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATT
GCGGCAAAGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCC
ATGCAAGTTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCG
CTGTCATATTCTTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAG
GAATGGGCTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAA
AGTCCTGGAGAGGATTGTGGGAGCAAAAAAAAATGACCTGCAGCTGGCTG
TCGAAAAGCACGCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGA
TTGATGCGTACATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTG
GGGCTGCTTACTATAACA
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