CB611024

Overview
NameCB611024
Unique NameCB611024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: SAMH1_DANRE (SAM domain and HD domain-containing protein 1 OS=Danio rerio GN=samhd1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.618e-17
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  156 KNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQ 368
            K  +D +HG+I L PL L FIDT QFQRLR +KQLG T+LV+PGA H+RFEHS+GV +LAG  ++ L + Q
Sbjct:   95 KVFNDPIHGHIELHPLLLHFIDTPQFQRLRHIKQLGGTYLVFPGASHNRFEHSIGVGYLAGCLVKALNERQ 165          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: SAMH1_CHICK (SAM domain and HD domain-containing protein 1 OS=Gallus gallus GN=SAMHD1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.832e-17
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 3
Query:  156 KNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQ-----VQKHSLC 389
            K  +D VHG+I + PL ++ IDT QFQRLR +KQLG T+ V+PGA H+RFEHSLGV +LAG  +++LK+ Q      Q+  LC
Sbjct:  107 KVFNDPVHGHIEIHPLLVRIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGCLVRELKERQPELDITQRDILC 189          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: SAMH1_DICDI (Protein SAMHD1 homolog OS=Dictyostelium discoideum GN=DDB_G0272484 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.437e-15
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  153 SKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQ 368
            SK ++D +HG++ +    + FIDTEQFQRLRDLKQ+G T  V+P A HSRFEHS+GV  LAG  I ++K  Q
Sbjct:   79 SKIINDVIHGHMEVPDYIMDFIDTEQFQRLRDLKQVGTTSFVFPCASHSRFEHSIGVSHLAGKYIDRIKVTQ 150          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: SAMH1_BOVIN (SAM domain and HD domain-containing protein 1 OS=Bos taurus GN=SAMHD1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.876e-15
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  156 KNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQ 368
            K ++D +HG+I   PL ++ IDT QFQRLR +KQLG  + V+PGA H+RFEHSLGV +LAG  +++L + Q
Sbjct:  104 KVINDPIHGHIEFHPLLMRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGRLVRELSEKQ 174          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: SAMH1_XENLA (SAM domain and HD domain-containing protein 1 OS=Xenopus laevis GN=samhd1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 38/71 (53.52%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  156 KNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQ 368
            K  +D +HG+I L PL ++ IDT +FQRLR +KQLG ++ V+PGA H+RFEHS+GV +LAG  +Q L + Q
Sbjct:  113 KVFNDPIHGHIELHPLLVRIIDTPEFQRLRYIKQLGGSYYVFPGASHNRFEHSIGVGYLAGCLVQALHERQ 183          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: SAMH1_HUMAN (SAM domain and HD domain-containing protein 1 OS=Homo sapiens GN=SAMHD1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  156 KNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQ 368
            K ++D +HG+I L PL ++ IDT QFQRLR +KQLG  + V+PGA H+RFEHSLGV +LAG  +  L + Q
Sbjct:  116 KVINDPIHGHIELHPLLVRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVHALGEKQ 186          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: SAMH1_MOUSE (SAM domain and HD domain-containing protein 1 OS=Mus musculus GN=Samhd1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 3
Query:  144 IRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQ 368
            I   K  +D +HG+I   PL ++ IDT QFQRLR +KQLG  + V+PGA H+RFEHSLGV +LAG  ++ L + Q
Sbjct:  113 IDLMKVFNDPIHGHIEFHPLLIRIIDTPQFQRLRYIKQLGGGYYVFPGASHNRFEHSLGVGYLAGCLVRALAEKQ 187          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: Y1154_METJA (Uncharacterized protein MJ1154 OS=Methanocaldococcus jannaschii GN=MJ1154 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.216e-14
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  156 KNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKL 356
            K + D++H +IYLD   L+ ID+E+FQRLR++KQ G+T+LVYP A H+RFEHSLG  ++A    +K+
Sbjct:    2 KVIRDSIHKDIYLDEKELEIIDSEEFQRLRNIKQTGLTYLVYPSANHTRFEHSLGTMFIASKIAEKI 68          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: YS48_CAEEL (Uncharacterized protein ZK177.8 OS=Caenorhabditis elegans GN=ZK177.8 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 40/91 (43.96%), Postives = 56/91 (61.54%), Query Frame = 3
Query:   96 SFPPVHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKLKQNQ 368
            S  P + N+ S + + I     ++DNV+G + +     K IDT +FQRLR LKQ G+ +LVYP   HSRF HSLG + LA A + KL+ +Q
Sbjct:   29 SSSPCNMNWQSLEPKHI-----INDNVYGTVKVPRPIDKLIDTVEFQRLRHLKQTGLVYLVYPNCEHSRFVHSLGTFSLAYALVDKLRHSQ 114          
BLAST of CB611024 vs. ExPASy Swiss-Prot
Match: YL394_MIMIV (Putative HD domain-containing protein L394 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L394 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.536e-12
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  108 VHANFASSQEQLIRFSKNVHDNVHGNIYLDPLALKFIDTEQFQRLRDLKQLGVTHLVYPGAVHSRFEHSLGVYWLAGAAIQKL 356
            +H NF     +   +SK    N++G I +  +A K IDT +FQRLR++KQLG+ +LV+P A H+R EHS+GVY      I+++
Sbjct:    4 IHINFKMKSRE---YSKLFGCNIYGFIRVTSMAQKIIDTSEFQRLRNMKQLGLCYLVFPAATHTRLEHSIGVYDRTRKVIERI 83          
The following BLAST results are available for this feature:
BLAST of CB611024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SAMH1_DANRE2.618e-1759.15SAM domain and HD domain-containing protein 1 OS=D... [more]
SAMH1_CHICK5.832e-1753.01SAM domain and HD domain-containing protein 1 OS=G... [more]
SAMH1_DICDI1.437e-1555.56Protein SAMHD1 homolog OS=Dictyostelium discoideum... [more]
SAMH1_BOVIN1.876e-1553.52SAM domain and HD domain-containing protein 1 OS=B... [more]
SAMH1_XENLA2.450e-1553.52SAM domain and HD domain-containing protein 1 OS=X... [more]
SAMH1_HUMAN2.450e-1554.93SAM domain and HD domain-containing protein 1 OS=H... [more]
SAMH1_MOUSE7.130e-1552.00SAM domain and HD domain-containing protein 1 OS=M... [more]
Y1154_METJA1.216e-1452.24Uncharacterized protein MJ1154 OS=Methanocaldococc... [more]
YS48_CAEEL1.138e-1243.96Uncharacterized protein ZK177.8 OS=Caenorhabditis ... [more]
YL394_MIMIV2.536e-1242.17Putative HD domain-containing protein L394 OS=Acan... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_C02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611024 ID=CB611024; Name=CB611024; organism=Citrus sinensis; type=EST; length=599bp
GGGGGTAGCAGCAGAAGCCGATACTGAGAGCTGGTTGGTCTGCTGAAGCT
GACGTTGGCGCTGATGCAATGGGCGCTTTCTTTAACGAAGAGCTCTCGTT
CCCTCCGGTCCACGCCAACTTTGCTTCGTCGCAAGAACAACTGATCAGAT
TCTCTAAAAACGTTCACGACAATGTTCACGGCAACATTTATCTCGACCCC
CTCGCTTTGAAGTTTATTGACACTGAGCAGTTTCAGAGGCTACGTGACCT
TAAACAACTTGGTGTGACGCATTTGGTTTATCCGGGGGCAGTGCATTCTA
GATTTGAACACTCTCTTGGGGTGTACTGGCTCGCCGGTGCAGCTATTCAA
AAGCTCAAACAGAACCAAGTACAGAAACATTCTCTGTGTTTTTTGATTAC
TTGAAGTCTTATTTTGTTCAATATTTCTAGATGTTTCATGGAAATGCTCC
AATCATTGTAGGGTTTGGAACTTGGTATTGATAACTTTGACATCCAAACT
GTGAAACTTGCAGGTAATTGAGTGTGTTCCCCATGATTTTCTATTGCATG
TCGACTGATTCCTTAACTGCTTTCCTTTATCACATCTGGAGGACTGCTA
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