CB611035

Overview
NameCB611035
Unique NameCB611035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig420 contig Csv1_Contig420:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.599e-87
Identity = 159/194 (81.96%), Postives = 181/194 (93.30%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILSSETM IP+GV +K+NAK+IEVEGPRGKL R+FKHLNLDF L+TD E GK+KLKIDAWFGSRKTSAAIRTALSHV+NLITGVTKG+RYKMRFV+A FPINASI N +KSIEIRNFLGEKKVR+V++LDGV+++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKG +V E+
Sbjct:    1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITD-ENGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVEE 193          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 317.775 bits (813), Expect = 4.901e-86
Identity = 155/194 (79.90%), Postives = 178/194 (91.75%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILSSETM+IP+ V +K++AK+IEVEGPRGKL R+FKHLNLDF L+ D ETGK+KLKID+WFG+RKTSA+IRTALSHV NLI+GVT+G+RYKMRFV+AHFPINASI    KSIEIRNFLGEKKVR+VEMLDGVT++RS+KVKDE++LDGNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEK  IV E+
Sbjct:    1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKIDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEEE 194          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 313.923 bits (803), Expect = 7.077e-85
Identity = 154/190 (81.05%), Postives = 177/190 (93.16%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTI 625
            MKTIL+SETMEIPEGV V++ AK++ VEGPRGKL+RNFKHLNLDF L+  G    RKL++DAWFG+R+T AAIRTA+SHVQNLITGVTKGYRYKMRFV+AHFPINASI N++ +IEIRNFLGEKKVR+V+ML+GVT+LRS+KVKDEL+LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVS+KGTI
Sbjct:    1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGG----RKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTI 186          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 9.243e-85
Identity = 154/194 (79.38%), Postives = 177/194 (91.24%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILSSETM+IP+GV +K+NAK+IEVEGPRGKL+R+FKHLNLDF L+ D  TGKR+LKID+WFGSRKTSA+IRTALSHV NLI GVT+G+ Y+MRFV+AHFPINASI   +KSIEIRNFLGEKKVR+VEMLDGV ++RS+KVKDE+IL+GNDIELVSRS ALINQKCHVK KDIRKFLDGIYVSEKG I  E+
Sbjct:    1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKIDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVEE 194          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.660e-57
Identity = 112/191 (58.64%), Postives = 139/191 (72.77%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIV 628
            MKTILS++T++IP+ V V +  + + V+GPRG L R F H+NL+  L+   +   +KL++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR V+AHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDEL+L+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+V
Sbjct:    1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQ---KKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVV 188          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_MOUSE (60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.391e-56
Identity = 112/194 (57.73%), Postives = 141/194 (72.68%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILS++T++IPE V++ +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR V+AHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_MACFA (60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.817e-56
Identity = 113/194 (58.25%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A IRT  SHVQN+I GVT G+RYKMR V+AHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.817e-56
Identity = 112/194 (57.73%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR V+AHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDINLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_RAT (60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.372e-56
Identity = 112/194 (57.73%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR V+AHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQPD 191          
BLAST of CB611035 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.372e-56
Identity = 112/194 (57.73%), Postives = 140/194 (72.16%), Query Frame = 2
Query:   56 MKTILSSETMEIPEGVKVKINAKIIEVEGPRGKLSRNFKHLNLDFHLMTDGETGKRKLKIDAWFGSRKTSAAIRTALSHVQNLITGVTKGYRYKMRFVHAHFPINASIANADKSIEIRNFLGEKKVRRVEMLDGVTVLRSDKVKDELILDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTIVGED 637
            MKTILS++T++IPE V + +  + + V+GPRG L R+F H+N++  L+      K++L++D W+G+RK  A +RT  SHVQN+I GVT G+RYKMR V+AHFPIN  I      +EIRNFLGEK +RRV M  GV    S   KDELIL+GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEKGT+   D
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191          
The following BLAST results are available for this feature:
BLAST of CB611035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL9_PEA2.599e-8781.9660S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL91_ARATH4.901e-8679.9060S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL9_ORYSJ7.077e-8581.0560S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
RL92_ARATH9.243e-8579.3860S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL9_ICTPU3.660e-5758.6460S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_MOUSE1.391e-5657.7360S ribosomal protein L9 OS=Mus musculus GN=Rpl9 P... [more]
RL9_MACFA1.817e-5658.2560S ribosomal protein L9 OS=Macaca fascicularis GN... [more]
RL9_BOVIN1.817e-5657.7360S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_RAT2.372e-5657.7360S ribosomal protein L9 OS=Rattus norvegicus GN=R... [more]
RL9_HUMAN2.372e-5657.7360S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IaF_A11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IaF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611035 ID=CB611035; Name=CB611035; organism=Citrus sinensis; type=EST; length=849bp
GGGGGAGGGTTTAGGGAAGGAGCTGAGCCGCAGCAGAGGCAGAGCAGCTT
TCATCATGAAGACAATACTTTCTTCAGAGACGATGGAGATCCCAGAGGGG
GTGAAAGTAAAGATAAATGCGAAGATAATAGAAGTAGAGGGACCTAGAGG
TAAGCTTAGCCGCAATTTCAAGCATTTGAACCTAGACTTCCATCTCATGA
CTGATGGGGAAACTGGGAAGCGGAAGCTGAAGATCGACGCATGGTTTGGG
TCTCGCAAGACCAGTGCCGCCATCAGAACTGCCCTCAGCCATGTACAGAA
CCTCATCACTGGGGTTACCAAGGGCTACCGTTACAAGATGAGATTCGTCC
ACGCTCACTTTCCCATCAACGCCTCCATCGCCAACGCTGACAAGTCCATT
GAGATCCGTAACTTTCTAGGAGAAAAGAAGGTTCGAAGAGTGGAAATGCT
TGACGGTGTTACCGTTCTTCGGTCTGACAAGGTTAAGGATGAACTCATTC
TTGATGGGAATGACATTGAACTTGTGTCGCGGTCCGCTGCTTTGATCAAT
CAGAAATGCCATGTGAAGAACAAAGATATCAGGAAATTCTTAGACGGGAT
CTATGTCAGTGAGAAGGGCACAATTGTTGGAGAGGATTAGCTAGCTTTCA
AATTTTATGTCACATTATTATCATGAAATTGGTATTAATCTTGCTCTTTT
TGCCCTGTGTTGGGGAAGTCCTTTTTTTTTCGTTTGGAATTTTGGTATTA
GAGGGTTTTAGATTTCTGCTTCACTCCATGTACTTTTGTTCCAATATGTA
TCAAATGGATTTTATACCTATTTGCCTGCAAAAAAAAAAAAAAAAAAAA
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