CB611061

Overview
NameCB611061
Unique NameCB611061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CB611061 vs. ExPASy Swiss-Prot
Match: PSUK_ECOLI (Pseudouridine kinase OS=Escherichia coli (strain K12) GN=psuK PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.948e-13
Identity = 45/150 (30.00%), Postives = 78/150 (52.00%), Query Frame = 3 
Query:  150 QEAAEAVIIGGMVLDIHATPSIPANPRTTTPGKVNYVLGGVARNVAECMSKLGSKPYMISALGLDMAGNILLEHWKSAGLSTEGIRRQKDIDTAVVSNILDVNGELAAAVASVESIEKFLTPDWIRQFIHHISSASVLMVDANLSPPALA 599
            +E    VIIG   +D+        N   + PGK+ +  GGV RN+A+ ++ LG+K +++SA+G D  G  LL     +G+  +        +T+   ++LD  GE+  A+  + +I   +T +++ Q    I  A V++ D N+S  ALA
Sbjct:    2 REKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDM-NISNAITAEYLAQHGEFIQRAKVIVADCNISEEALA 150
The following BLAST results are available for this feature:
BLAST of CB611061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSUK_ECOLI1.948e-1330.00Pseudouridine kinase OS=Escherichia coli (strain K... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_E05 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611061 ID=CB611061; Name=CB611061; organism=Citrus sinensis; type=EST; length=632bp
GGGGGCACTCAAAAAGCGTTGGAAGCAAAATGGACAGCAGCAGTGTTCAC
GAGCGATTGAACGCAGTCTTTCGCCACCTTTTGCAGCAGCCATGCGAAGC
TAATCCCGTTCTTCATAAGGTTTTGTTAACAAGCAGGCACTTGCAAAAAC
AAGAAGCAGCAGAGGCAGTGATCATAGGAGGCATGGTTTTGGACATTCAT
GCCACTCCATCGATCCCTGCAAACCCAAGAACCACTACTCCAGGCAAGGT
GAATTATGTGTTAGGGGGTGTAGCAAGGAATGTTGCGGAGTGCATGTCAA
AGCTTGGATCTAAGCCTTACATGATTAGTGCTCTTGGACTTGACATGGCT
GGAAATATACTGTTGGAGCATTGGAAATCTGCTGGCCTGTCTACAGAAGG
CATTAGGAGGCAGAAAGATATCGATACTGCTGTTGTAAGCAACATACTTG
ATGTCAATGGAGAACTGGCGGCTGCTGTTGCAAGTGTCGAATCGATAGAA
AAATTCCTCACACCTGACTGGATTCGACAATTCATCCACCATATATCTTC
CGCTTCAGTATTGATGGTTGATGCAAACCTGAGTCCTCCTGCTTTAGCAG
CTTCTTGTAAAATTGCAGCAGAAGATAACATT
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