CB611076

Overview
NameCB611076
Unique NameCB611076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2871 contig Csv1_Contig2871:805..1182. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_ARATH (Phenylalanine ammonia-lyase 1 OS=Arabidopsis thaliana GN=PAL1 PE=1 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 8.087e-29
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  +PNRIKECRSYPLYR VREELG+  LTGEKVTSPGEEFDKVFTA+C+GKIIDPM+ECL EWNGA
Sbjct:  653 GTSAIPNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGA 720          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_CITLI (Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL6 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.073e-28
Identity = 53/68 (77.94%), Postives = 64/68 (94.12%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  +PNRIKECRSYPLY++VRE++G++ LTGEKV SPGEEFDKVFTAMC+GK+IDPMLECL+EWNGA
Sbjct:  648 GNAAIPNRIKECRSYPLYKIVREDIGTSLLTGEKVRSPGEEFDKVFTAMCEGKLIDPMLECLKEWNGA 715          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_ARATH (Phenylalanine ammonia-lyase 2 OS=Arabidopsis thaliana GN=PAL2 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.013e-28
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  +PNRIKECRSYPLYR VREELG+  LTGEKV SPGEEFDKVFTAMC+GK+IDP+++CL+EWNGA
Sbjct:  645 GTAPIPNRIKECRSYPLYRFVREELGTKLLTGEKVVSPGEEFDKVFTAMCEGKLIDPLMDCLKEWNGA 712          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_VITVI (Phenylalanine ammonia-lyase (Fragment) OS=Vitis vinifera GN=PAL PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.941e-28
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PNRIKECRSYPLY+ VREELG+  LTGEKV SPGE+FDKVFTAMC+GKIIDP+L+CL  WNGA
Sbjct:  344 GNPSIPNRIKECRSYPLYKFVREELGTGLLTGEKVRSPGEDFDKVFTAMCEGKIIDPLLDCLSAWNGA 411          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL2_POPKI (Phenylalanine ammonia-lyase G2B OS=Populus kitakamiensis GN=PALG2B PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.941e-28
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PNRIKECRSYPLY+ VREELG++ LTGEKV SPGEEFDKVFTA+C GK+IDP+LECL+EW+GA
Sbjct:  638 GNPAIPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEEFDKVFTAICAGKLIDPLLECLKEWDGA 705          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_POPKI (Phenylalanine ammonia-lyase G1 OS=Populus kitakamiensis GN=PALG1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.992e-27
Identity = 52/68 (76.47%), Postives = 63/68 (92.65%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+P +PNRIKECRSYPLY+ VREELG++ LTGEKV SPGE+FDKVFTA+C GK++DP+LECL+EWNGA
Sbjct:  610 GNPVVPNRIKECRSYPLYKFVREELGTSLLTGEKVKSPGEDFDKVFTAICAGKLMDPLLECLKEWNGA 677          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.398e-27
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  +PNRIKECRSYPLY+ VREEL ++ LTGEKV SPGEEFDKVF+A+CQGK+IDP+LECLREWNGA
Sbjct:  548 GNSAIPNRIKECRSYPLYKFVREELKTSLLTGEKVRSPGEEFDKVFSAICQGKVIDPLLECLREWNGA 615          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_PHAVU (Phenylalanine ammonia-lyase class 1 (Fragment) OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.795e-27
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G   +PN+IKECRSYPLY+ VREELG+  LTGEKV SPGEEFDK+FTA+CQGKIIDP+LECL EWNGA
Sbjct:  434 GKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEEFDKLFTAICQGKIIDPLLECLGEWNGA 501          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PAL1_SOYBN (Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PAL1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.885e-27
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G   +PN+I+ECRSYPLY+ VREELG+  LTGEKV SPGEEFDK+FTAMCQGKIIDP++ECL EWNGA
Sbjct:  641 GKAAIPNKIQECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGA 708          
BLAST of CB611076 vs. ExPASy Swiss-Prot
Match: PALY_POPTR (Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.291e-26
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 3
Query:    3 GSPDLPNRIKECRSYPLYRLVREELGSNFLTGEKVTSPGEEFDKVFTAMCQGKIIDPMLECLREWNGA 206
            G+  + N+IKECRSYPLY+ VREELG+  LTGEKV SPGEEFDKVFTAMCQGKIIDPMLECL EWNG+
Sbjct:  643 GNSAIDNKIKECRSYPLYKFVREELGTVLLTGEKVQSPGEEFDKVFTAMCQGKIIDPMLECLGEWNGS 710          
The following BLAST results are available for this feature:
BLAST of CB611076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PAL1_ARATH8.087e-2982.35Phenylalanine ammonia-lyase 1 OS=Arabidopsis thali... [more]
PALY_CITLI3.073e-2877.94Phenylalanine ammonia-lyase OS=Citrus limon GN=PAL... [more]
PAL2_ARATH4.013e-2877.94Phenylalanine ammonia-lyase 2 OS=Arabidopsis thali... [more]
PALY_VITVI8.941e-2877.94Phenylalanine ammonia-lyase (Fragment) OS=Vitis vi... [more]
PAL2_POPKI8.941e-2877.94Phenylalanine ammonia-lyase G2B OS=Populus kitakam... [more]
PAL1_POPKI1.992e-2776.47Phenylalanine ammonia-lyase G1 OS=Populus kitakami... [more]
PALY_PERAE3.398e-2777.94Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PAL1_PHAVU5.795e-2777.94Phenylalanine ammonia-lyase class 1 (Fragment) OS=... [more]
PAL1_SOYBN9.885e-2776.47Phenylalanine ammonia-lyase 1 OS=Glycine max GN=PA... [more]
PALY_POPTR1.291e-2679.41Phenylalanine ammonia-lyase OS=Populus trichocarpa... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_D07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611076 ID=CB611076; Name=CB611076; organism=Citrus sinensis; type=EST; length=379bp
GGGGAAGTCCAGATCTTCCCAACAGGATCAAAGAATGCAGGTCTTACCCT
TTGTACAGGTTAGTGAGGGAGGAGCTCGGGTCTAATTTTCTAACAGGGGA
AAAAGTTACATCGCCCGGCGAGGAATTTGATAAAGTGTTTACAGCAATGT
GCCAGGGCAAGATCATTGATCCAATGCTGGAATGTCTCAGGGAATGGAAT
GGCGCCCCTCTTCCAATTTGTTAGTTGTTTTTATTTTGTTTAATAACACG
GTCTTCAATCCCTTGTGTTCTTGTGTTCATAGAATTTGCCCATGCGAGTC
AGTGGTACGAATTCATCTGTAATATTTCAATCACTTCTATTGGTTTTTTT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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