CB611085 | Citrus Genome Database

Overview


Name	CB611085
Unique Name	CB611085
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	608

Libraries


Library Name	Type
Mature Albedo	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CB611085_ssr571	microsatellite	CB611085_ssr571:571..582.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.001e-48
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSL+PS FGGRRTNVFDPFSLDVWDPF+GFL+  LTNAP  A++ + F NA++DW+ETP+AHVFK
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFK 63

HSP 2 Score: 105.916 bits (263), Expect = 2.001e-48
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 2

Query:  269 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP+NAKVE+VKASMENGVL+VT            +++ISG
Sbjct:   81 GNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.828e-47
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 2

Query:  275 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV             +I+ISG
Sbjct:   86 VLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159

HSP 2 Score: 103.99 bits (258), Expect = 2.828e-47
Identity = 50/67 (74.63%), Postives = 58/67 (86.57%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFL--SSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIPSIFGGRR+NVFDPFS D+WDPF+GF   SSAL NA S+AR+ + F NAR+DWKETP+AHVFK
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFK 66

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.064e-46
Identity = 53/76 (69.74%), Postives = 60/76 (78.95%), Query Frame = 2

Query:  269 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP+NAK+E++KASMENGVL+VT            +I+ISG
Sbjct:   82 GNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157

HSP 2 Score: 100.138 bits (248), Expect = 1.064e-46
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLS-SALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIPSIFGGRRTNVFDPFSLDV+DPF+GFL+ S L NAP  A + + F NA++DW+ETP+AHVFK
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFK 64

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.330e-45
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 2

Query:  266 QGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            +G++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT            AI+ISG
Sbjct:   81 EGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157

HSP 2 Score: 92.4337 bits (228), Expect = 3.330e-45
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MS+IPS FGGRR+NVFDPFSLDVWDPF  F     ++A    +ET+ F N  IDWKETPQAHVFK
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFK 64

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.251e-44
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 2

Query:  272 RILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:   87 KVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161

HSP 2 Score: 92.4337 bits (228), Expect = 1.251e-44
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGF-----LSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIP+ FGGRR NVFDPFSLDVWDPF  F     LSSA  + P  +RE S F + R+DWKETP+AHVFK
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFK 68

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.043e-43
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 2

Query:  272 RILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:   79 RVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153

HSP 2 Score: 90.1225 bits (222), Expect = 1.043e-43
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFK 269
            MSLIPSIFGGRR+NVFDPFSLDVWDPF  F      + P+S + E S F N R+DWKETP+AHVF+
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFE 60

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.357e-43
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = 2

Query:  272 RILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+MENGVLTVT             I+ISG
Sbjct:   84 RVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158

HSP 2 Score: 93.2041 bits (230), Expect = 1.357e-43
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIPS FGGRR+NVFDPFSLDVWDPF  F  +    + S  RE S F + R+DWKETP+AHVFK
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFK 65

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.914e-43
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 2

Query:  272 RILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKASMENGVLTVT            +IEISG
Sbjct:   84 RVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158

HSP 2 Score: 88.5817 bits (218), Expect = 3.914e-43
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFK 269
            MSLIPS F GRR+NVFDPFSLDVWDP   F  S  + + S  RE   F + R+DWKETP+AHVFK
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFK 65

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.501e-42
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 2

Query:  269 GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKASMENGVLTVT            AI+ISG
Sbjct:   78 GRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153

HSP 2 Score: 86.2705 bits (212), Expect = 2.501e-42
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFK 269
            MSLIPS FGGRR++VFDPFSLDVWDPF  F        PSS + E S F + R+DWKETP+AHVFK
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDF------PFPSSLSAENSAFVSTRVDWKETPEAHVFK 60

[Close]

BLAST of CB611085 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.390e-42
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 2

Query:  272 RILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 496
            R+LQISGER+ E+E+KND WHRVERSSGKF RRFRLP+NAKV +VKASMENGVLTVT            AIEISG
Sbjct:   80 RVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154

HSP 2 Score: 85.8853 bits (211), Expect = 9.390e-42
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 3

Query:   75 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFK 269
            MSLIP  FGGRR+NVFDPFSLD+WDPF  F      + P+S  + E S F + R+DWKETP+AHVFK
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVSTRVDWKETPEAHVFK 61

The following BLAST results are available for this feature:

BLAST of CB611085 vs. ExPASy Swiss-Prot

BLAST of CB611085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40


Match Name	E-value	Identity	Description
HSP17_ARATH	2.001e-48	72.31	17.4 kDa class I heat shock protein OS=Arabidopsis...	[more]
HS181_ARATH	2.828e-47	68.92	18.1 kDa class I heat shock protein OS=Arabidopsis...	[more]
HS17C_ARATH	1.064e-46	69.74	17.6 kDa class I heat shock protein 3 OS=Arabidops...	[more]
HSP11_DAUCA	3.330e-45	68.83	17.8 kDa class I heat shock protein OS=Daucus caro...	[more]
HSP16_SOYBN	1.251e-44	72.00	18.5 kDa class I heat shock protein OS=Glycine max...	[more]
HSP13_SOYBN	1.043e-43	72.00	17.5 kDa class I heat shock protein OS=Glycine max...	[more]
HSP12_MEDSA	1.357e-43	66.67	18.2 kDa class I heat shock protein OS=Medicago sa...	[more]
HSP11_PEA	3.914e-43	70.67	18.1 kDa class I heat shock protein OS=Pisum sativ...	[more]
HSP11_SOYBN	2.501e-42	69.74	17.3 kDa class I heat shock protein OS=Glycine max...	[more]
HSP14_SOYBN	9.390e-42	70.67	17.5 kDa class I heat shock protein OS=Glycine max...	[more]

Pages

Properties


Property Name	Value
Genbank description	ALBEDO0001_IVaF_B12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_B12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB611085 ID=CB611085; Name=CB611085; organism=Citrus sinensis; type=EST; length=608bp
GGGGATCTTCGAATTGCTTGATCAAAACACTTCTGAAGTTGTTGAGCATT
TAATTAGCGCCCCAGTTTGCCATAATGTCACTCATTCCAAGCATCTTCGG
TGGCCGAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATC
CTTTCGACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCT
AGGGAAACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCC
TCAGGCTCATGTATTCAAGGCAGGATTCTGCAGATAAGCGGGGAGAGGAG
CAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCA
GTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAG
CAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTGACTGTTCCTAA
ACAGGAGGAGAAGAAACCTGAAGTTAAGGCCATTGAGATCTCTGGCTAAG
TGATAAGTGTAAATGTTTTCAAGATTGTGTCTTTGGTTTGCTAATAAATT
TGGTACCAAAGCAAAGCCCTTGTGTGTGTGTGGGAGTGTTTGCAAGAGGT
TCACTTCC