CB611093

Overview
NameCB611093
Unique NameCB611093
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig424 contig Csv1_Contig424:1..652. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.983e-40
Identity = 100/205 (48.78%), Postives = 123/205 (60.00%), Query Frame = 3
Query:    3 AEAPDKSKDNILEDINTSFAFKPVAESGS-FSLGTRNKQSSPSIEVSVQSENSPQNVNAAKVHSQYRNSLSLQVQTDFSRATTEKDNGCNTILADQRVFDTFGGSTEHSPPLDEQQDEEGDQRGSGDSMVAGAGGASSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKPPPNRRSAI 614
            A + +K+KD   +DI  SF+F PV+ S S F  GT    S   ++    +  S  + +A +V     N  S    ++     T+  NG N          T   +T  S    + Q+EE +QR  GDSM   AGGA +EDGYNWRKYGQK VKGSEYPRSYYKCT+PNCQVKKKVERS EG +TEIIYKGAHN  KPPPNRRS +
Sbjct:  155 ALSSEKAKDEFFDDIGASFSFHPVSRSSSSFFQGTTEMMS---VDYGNYNNRSSSHQSAEEVKPGSENIES----SNLYGIETDNQNGQNK---------TSDVTTNTSLETVDHQEEEEEQR-RGDSM---AGGAPAEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKPPPNRRSGM 339          

HSP 2 Score: 73.1738 bits (178), Expect = 1.340e-12
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEI-IYKGAHNRPKPPPNRRS 608
            +DGY WRKYGQK VKG+  PRSYYKCT P C V+K VER+     + I  Y+G HN   P     S
Sbjct:  487 DDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSS 552          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.596e-32
Identity = 71/107 (66.36%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  330 PLDEQQDEEGDQRGSGDSMVAGAGGASSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKPPPNRRSAIGSNPL--DMQLD 644
            P D Q  EE    G GDSM   A  A ++DGYNWRKYGQK VKGSEYPRSYYKCTHPNC+ KKKVERS EG + EIIY G H   KPPPNRRS IGS+    DMQ+D
Sbjct:  153 PDDSQDYEERQLGGLGDSM---ACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKPPPNRRSGIGSSGTGQDMQID 256          

HSP 2 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 33/70 (47.14%), Postives = 40/70 (57.14%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEG-RLTEIIYKGAHNRPKPPPNRRSAIGS 620
            +DGY WRKYGQK VKG+  PRSYYKCT   C V K VER+ +  +     Y G H    P     S +G+
Sbjct:  372 DDGYRWRKYGQKVVKGNPNPRSYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGA 441          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.817e-29
Identity = 75/197 (38.07%), Postives = 103/197 (52.28%), Query Frame = 3
Query:   48 NTSFAFKPVAESGSFSLGTRNKQSSPSIEVSVQSENSPQNVNAA-KVHSQYRNSLSLQVQTD---FSRATTEKDNGCNTILADQRVFDTFGGSTEHSPPLDEQQDEEGDQRGSGDSM-VAGAGGASSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKPPPNRRSAIGSN 623
            +T F+     +S +F   + N  +SP+    + +  + + +N   K ++   N       T     S  TT       T   +  +F     S E       +Q  + + R +  ++   G      EDGYNWRKYGQKQVKGSE PRSYYKCT PNC  KKKVERSLEG++TEI+YKG+HN PKP   RRS+  S+
Sbjct:   61 STCFSPSLFLDSPAFVSSSANVLASPTTGALITNVTNQKGINEGDKSNNNNFNLFDFSFHTQSSGVSAPTTTTTTTTTTTTTNSSIFQ----SQEQQKKNQSEQWSQTETRPNNQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQSTRRSSSSSS 253          

HSP 2 Score: 74.3294 bits (181), Expect = 6.013e-13
Identity = 65/214 (30.37%), Postives = 88/214 (41.12%), Query Frame = 3
Query:   12 PDKSK-DNILEDINTSFAFKPVAESGSFSLGTRNKQSSPSIEVSVQSENSPQNVNAAKVHSQYRNSLSLQVQTDFSRATTEKDNGCNTILADQRVFDTFGGSTEHSPPLDEQQDEEGDQRGSGDSMVAGAGGASS-------------------EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVER-SLEGRLTEIIYKGAHNRPKP 590
            P K K +  LE   T   +K            R+  SS +   +V + +   N  A+       NS     Q+D S    ++DN  +  + D        GS+  S   ++   E   +R  GD+   G  G  S                   +DGY WRKYGQK VKG+  PRSYYKCT   C V+K VER S + R     Y+G HN   P
Sbjct:  215 PTKKKVERSLEGQITEIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFH---QSD-SFGMQQEDNTTSDSVGDDEFEQ---GSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMRAVITTYEGKHNHDVP 421          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.275e-28
Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:  345 QDEEGDQRGSGDSMVAGAGGASSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKPPPNRRSAIGSNPLDMQLD 644
            Q  + D RGS  S++A       +DGYNWRKYGQK VKGSE+PRSYYKCTHPNC+VKK  ERS +G++T+IIYKG H+ PKP P RR++ G    + +LD
Sbjct:  195 QTSQNDSRGSTPSILA-------DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPGRRNSGGMAAQEERLD 287          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.526e-24
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 3
Query:  399 GGASSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKP--PPNRRSA 611
            G  SS DGYNWRKYGQKQVKGSE PRSYYKCTHP C VKKKVERS+EG+++EI+Y+G HN  KP  P  RR++
Sbjct:  160 GDRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKPSCPLPRRAS 232          

HSP 2 Score: 82.8037 bits (203), Expect = 1.691e-15
Identity = 63/195 (32.31%), Postives = 82/195 (42.05%), Query Frame = 3
Query:   66 KPVAESGSFSLGTRNKQSSPSIEVSVQSENSPQNVNAAKVHSQYRNSLSLQVQTDFSRATTEKDNGCNTILADQRVFDTFGGSTEHSPPLDEQQDEEGDQRGSGDSMVAGAGGASSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVER-SLEGRLTEIIYKGAHNRP---KPPPNRRSAIGSNPLDMQ 638
            K +A  GS      N   SP    + QS +S QN                 V    +      D+GC +   D+   D    S       ++Q  E G  +GS +S        S EDG+ WRKYGQK V G+ YPRSYY+CT  NC+ +K VER S + R     Y+G HN      PP +      S  L  Q
Sbjct:  244 KSIASEGSMGQDPNNNLYSPLW--NNQSNDSTQNRTEKMSEGCVITPFEFAVPRSTNSNPGTSDSGCKSSQCDEGELDDPSRSKRRKN--EKQSSEAGVSQGSVES-------DSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHHLLLSPPSSSTLPFNSPQLSKQ 427          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.399e-24
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 3
Query:  411 SEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKPPPNRR 605
            ++DGYNWRKYGQKQVKGSE+PRSYYKCT+P C VKKKVERSL+G++TEIIYKG HN  +PP N +
Sbjct:  228 ADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNH-EPPQNTK 291          

HSP 2 Score: 76.2554 bits (186), Expect = 1.582e-13
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVER-SLEGRLTEIIYKGAHNRPKP 590
            +DGY WRKYGQK VKG+ YPRSYYKCT P C V+K VER + + +     Y+G HN   P
Sbjct:  409 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 468          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.572e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 3
Query:  411 SEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKP 590
            ++DGYNWRKYGQKQVKGS++PRSYYKCTHP C VKKKVERSL+G++TEIIYKG HN   P
Sbjct:  249 ADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNHELP 308          

HSP 2 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVER-SLEGRLTEIIYKGAHNRPKP 590
            +DGY WRKYGQK VKG+ YPRSYYKCT P+C V+K VER + + +     Y+G HN   P
Sbjct:  415 DDGYRWRKYGQKVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVP 474          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.687e-23
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = 3
Query:  408 SSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSL-EGRLTEIIYKGAHNRPKPPPNRRSA 611
            +S+DGYNWRKYGQKQVKGSE PRSY+KCT+PNC  KKKVE SL +G++ EI+YKG+HN PKP   +RS+
Sbjct:  115 TSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPKPQSTKRSS 183          

HSP 2 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEI-IYKGAHNRPKPPPNR 602
            +DGY WRKYGQK VKG+  PRSYYKCT   C V+K VER+ +   + I  Y+G H    P P R
Sbjct:  234 DDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPRR 297          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.372e-23
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  411 SEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKPPPNRRSAIGSNPLDM 635
            ++DGYNWRKYGQK +KG EYPRSYYKCTH NC VKKKVERS +G++T+IIYKG H+  + P NRR   G +  ++
Sbjct:  166 ADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHER-PQNRRGGGGRDSTEV 239          

HSP 2 Score: 78.9518 bits (193), Expect = 2.441e-14
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 3
Query:  414 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVER-SLEGRLTEIIYKGAHNRPKPPPNRRSA 611
            +DGY WRKYGQK VKG+ +PRSYYKCT PNC V+K VER S + +     Y+G HN   P     +A
Sbjct:  306 DDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGTA 372          
BLAST of CB611093 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.023e-20
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  408 SSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSLEGRLTEIIYKGAHNRPKPPPNRRSAIGSNP 626
            +S DGY WRKYGQKQVK SE PRSY+KCT+P+C  KK VE + +G++TEIIYKG HN PKP   +R +  S P
Sbjct:  164 NSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNHPKPEFTKRPSQSSLP 236          

HSP 2 Score: 74.7146 bits (182), Expect = 4.604e-13
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  417 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERS-LEGRLTEIIYKGAHNRPKPPPNRRS 608
            DG+ WRKYGQK VKG+  PRSYYKCT   C VKK+VERS  + R     Y+G HN   P   RRS
Sbjct:  329 DGFRWRKYGQKVVKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTALRRS 393          
The following BLAST results are available for this feature:
BLAST of CB611093 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
WRKY2_ARATH1.983e-4048.78Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK34_ARATH2.596e-3266.36Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK33_ARATH7.817e-2938.07Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK20_ARATH2.275e-2858.00Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK44_ARATH1.526e-2471.23WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRKY4_ARATH3.399e-2475.38Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRKY3_ARATH7.572e-2478.33Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK26_ARATH1.687e-2369.57Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK58_ARATH8.372e-2362.67Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK25_ARATH1.023e-2061.64Probable WRKY transcription factor 25 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_C10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611093 ID=CB611093; Name=CB611093; organism=Citrus sinensis; type=EST; length=652bp
GGGCAGAGGCCCCTGATAAAAGCAAGGATAACATCTTGGAGGACATCAAT
ACATCATTTGCATTTAAGCCTGTTGCAGAATCAGGTTCTTTTTCCCTTGG
TACAAGAAATAAGCAGTCCTCTCCTAGTATTGAGGTTTCTGTTCAGTCTG
AGAATTCCCCCCAAAATGTAAATGCAGCCAAAGTCCATTCTCAATACAGA
AACAGCCTCAGCCTCCAAGTCCAAACAGACTTCTCCAGAGCAACAACTGA
AAAGGATAATGGGTGTAATACCATCTTGGCTGATCAAAGGGTCTTTGATA
CTTTTGGTGGCAGTACTGAACATTCTCCACCTCTTGATGAGCAACAGGAT
GAAGAAGGAGATCAAAGAGGCAGTGGAGATTCCATGGTTGCTGGTGCTGG
AGGTGCATCATCTGAAGATGGATATAATTGGAGAAAATATGGACAAAAAC
AGGTGAAGGGTAGTGAGTATCCGCGTAGTTATTACAAGTGCACACATCCA
AACTGTCAGGTTAAGAAGAAAGTGGAGAGATCTCTTGAAGGCCGATTAAC
TGAGATCATATACAAAGGAGCTCATAATCGCCCCAAGCCTCCACCCAATC
GCCGATCAGCCATTGGGTCTAACCCTCTTGACATGCAATTAGACATTCAT
GA
back to top