CB611094

Overview
NameCB611094
Unique NameCB611094
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length259
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig748 contig Csv1_Contig748:870..1128. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611094 vs. ExPASy Swiss-Prot
Match: NOP56_MOUSE (Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.768e-18
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 LANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 195
            LANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  372 LANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAVVQAEEAAAEI 435          
BLAST of CB611094 vs. ExPASy Swiss-Prot
Match: NOP56_PONAB (Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.427e-18
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 LANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 195
            LANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  372 LANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435          
BLAST of CB611094 vs. ExPASy Swiss-Prot
Match: NOP56_MACFA (Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.427e-18
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 LANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 195
            LANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  372 LANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435          
BLAST of CB611094 vs. ExPASy Swiss-Prot
Match: NOP56_HUMAN (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4)

HSP 1 Score: 89.3521 bits (220), Expect = 6.427e-18
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 LANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 195
            LANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  372 LANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435          
BLAST of CB611094 vs. ExPASy Swiss-Prot
Match: NOP56_BOVIN (Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.427e-18
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    4 LANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENNDTEM 195
            LANKCSIASRIDCF+E  T++FGEKLREQVEERL FY+ G  PRKN+DVMK A+   E    E+
Sbjct:  372 LANKCSIASRIDCFSEVPTSVFGEKLREQVEERLSFYETGEIPRKNLDVMKEAMVQAEEAAAEI 435          
BLAST of CB611094 vs. ExPASy Swiss-Prot
Match: YZVL_CAEEL (Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis elegans GN=K07C5.4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.311e-14
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    4 LANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMK----AAIESTENNDTEMKEAA 207
            LANKCSIA+R+DCF+E   + +GE LR+QVE+RL+++  G  P+KNIDVMK    AA+E  E    + K+AA
Sbjct:  378 LANKCSIAARVDCFSETPVSTYGEFLRQQVEDRLEYFTSGTVPKKNIDVMKEAEEAAVEVKEKVIKKKKKAA 449          
BLAST of CB611094 vs. ExPASy Swiss-Prot
Match: NOP56_DICDI (Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.062e-12
Identity = 34/74 (45.95%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    4 LANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIESTENN--DTEMKEAATDTS 219
            L+NK SIA+RIDCF++  T  FG  L++QV +R+ F++ GVAP++N+DVMK  IE  E +  + E+K    ++S
Sbjct:  370 LSNKISIATRIDCFSDNPTAKFGVALKQQVADRIKFFNNGVAPKRNLDVMKEVIEEVEKDFAEEEVKPVVKESS 443          
BLAST of CB611094 vs. ExPASy Swiss-Prot
Match: NOP56_SCHPO (Nucleolar protein 56 OS=Schizosaccharomyces pombe GN=nop56 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.270e-12
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    4 LANKCSIASRIDCFAEKNTTIFGEKLREQVEERLDFYDKGVAPRKNIDVMKAAIE 168
            LANKCSIASRID F++  TT FG+ LR QVEERL+F+D GVAP +N   M  A E
Sbjct:  375 LANKCSIASRIDNFSDAPTTAFGQVLRRQVEERLNFFDTGVAPTRNSIAMAEAYE 429          
The following BLAST results are available for this feature:
BLAST of CB611094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NOP56_MOUSE3.768e-1867.19Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1... [more]
NOP56_PONAB6.427e-1867.19Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2... [more]
NOP56_MACFA6.427e-1867.19Nucleolar protein 56 OS=Macaca fascicularis GN=NOP... [more]
NOP56_HUMAN6.427e-1867.19Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1... [more]
NOP56_BOVIN6.427e-1867.19Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 S... [more]
YZVL_CAEEL4.311e-1452.78Uncharacterized NOP5 family protein K07C5.4 OS=Cae... [more]
NOP56_DICDI1.062e-1245.95Nucleolar protein 56 OS=Dictyostelium discoideum G... [more]
NOP56_SCHPO5.270e-1263.64Nucleolar protein 56 OS=Schizosaccharomyces pombe ... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IVaF_C11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IVaF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611094 ID=CB611094; Name=CB611094; organism=Citrus sinensis; type=EST; length=259bp
GGGCTTGCAAACAAGTGTTCTATTGCATCTCGCATTGACTGTTTTGCAGA
AAAAAACACTACCATTTTTGGGGAGAAACTTCGTGAACAAGTTGAGGAGC
GGCTGGACTTTTACGATAAGGGAGTTGCACCTCGTAAAAACATTGATGTG
ATGAAAGCTGCAATTGAAAGCACTGAAAACAATGATACAGAGATGAAAGA
AGCAGCAACTGATACTTCGGGGAAGAAAAGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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