CB611108

Overview
NameCB611108
Unique NameCB611108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB611108_ssr263 microsatellite CB611108_ssr263:263..274. BLAST: Citrus ESTs to Prunus persica proteins V1
CB611108_ssr618 microsatellite CB611108_ssr618:618..629. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5903 contig Csv1_Contig5903:22..874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EI3GA_XENLA (Eukaryotic translation initiation factor 3 subunit G-A OS=Xenopus laevis GN=eif3g-A PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.126e-29
Identity = 76/208 (36.54%), Postives = 106/208 (50.96%), Query Frame = 3
Query:  276 RVRKLANARLSDRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            R  K+   + S    +R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHW +RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Sbjct:   70 RTFKIETVKASKVVAQRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 270          

HSP 2 Score: 26.5646 bits (57), Expect = 1.126e-29
Identity = 13/28 (46.43%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  188 DRPRR---DGVKKVIEYKFNDDGNKVKI 262
            D PR      +K + EYK NDD   VKI
Sbjct:   41 DTPREVINGNIKTITEYKLNDDDKTVKI 68          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EIF3G_DANRE (Eukaryotic translation initiation factor 3 subunit G OS=Danio rerio GN=eif3g PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.910e-29
Identity = 75/206 (36.41%), Postives = 106/206 (51.46%), Query Frame = 3
Query:  276 RVRKLANARLSDRALERRNWAKFGDAVREDVGSRL-TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGK-GGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFI---------DKPXXXXXXXXXXXXTK-GTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            R  K+   + S     R+NW KFG++  +  G  + T   ++++ +       S  E+  A       + K  G  ++ CR C  KGDHW +RCP+KD   P +  +         +K              K G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Sbjct:   56 RTFKIETRKASKAVARRKNWKKFGNSEYDAPGPNVATTTVSDDVFMTFI----SSKEDLNAQDQDEDPMNKLKGQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKAAEPEPAQPVQNKTGKYVPPSLRDGGTRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGF 255          

HSP 2 Score: 27.7202 bits (60), Expect = 1.910e-29
Identity = 11/21 (52.38%), Postives = 14/21 (66.67%), Query Frame = 2
Query:  200 RDGVKKVIEYKFNDDGNKVKI 262
            +  +K V EYK +DDG K KI
Sbjct:   34 KGNIKTVTEYKIDDDGQKFKI 54          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EI3GB_XENLA (Eukaryotic translation initiation factor 3 subunit G-B OS=Xenopus laevis GN=eif3g-B PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.485e-29
Identity = 77/216 (35.65%), Postives = 107/216 (49.54%), Query Frame = 3
Query:  252 RSKXXXXXRVRKLANARLSDRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            + K     R  K+   + S     R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHW +RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Sbjct:   62 KDKKIKIVRTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITNKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTADKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 270          

HSP 2 Score: 25.7942 bits (55), Expect = 2.485e-29
Identity = 12/28 (42.86%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  188 DRPRR---DGVKKVIEYKFNDDGNKVKI 262
            D PR      +K + EYK ND   K+KI
Sbjct:   41 DTPREVINGNIKTITEYKLNDKDKKIKI 68          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EIF3G_XENTR (Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.186e-27
Identity = 80/235 (34.04%), Postives = 112/235 (47.66%), Query Frame = 3
Query:  195 PDETESRKLLNTSLTMTAIRSKXXXXXRVRKLANARLSDRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFI---------DK---PXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            P E  + K+   +        K     R  K+   + S     R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHW +RCP+KD   P +  +         DK   P              G YVPP +R G  R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Sbjct:   45 PQEVINGKIKTITEYKLNDEGKKIKIVRTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITSKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 272          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EIF3G_HUMAN (Eukaryotic translation initiation factor 3 subunit G OS=Homo sapiens GN=EIF3G PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.155e-26
Identity = 82/242 (33.88%), Postives = 117/242 (48.35%), Query Frame = 3
Query:  174 PPKQVI-GPDETESRKLLNTSLTMTAIRSKXXXXXRVRKLANARLSDRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            PPK+VI G  +T +   ++          K     R  ++   + S     R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHW +RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Sbjct:   55 PPKEVINGNIKTVTEYKIDED-------GKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 282          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EIF3G_BOVIN (Eukaryotic translation initiation factor 3 subunit G OS=Bos taurus GN=EIF3G PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.155e-26
Identity = 83/245 (33.88%), Postives = 115/245 (46.94%), Query Frame = 3
Query:  174 PPKQVIGPDETESRKLLNTSLTMTAIR----SKXXXXXRVRKLANARLSDRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            PPK+VI               T+T  R     K     R  ++   + S     R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHW +RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Sbjct:   55 PPKEVIN----------GNIKTVTEYRIDEDGKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQATQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 282          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EIF3G_MOUSE (Eukaryotic translation initiation factor 3 subunit G OS=Mus musculus GN=Eif3g PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.509e-26
Identity = 82/242 (33.88%), Postives = 116/242 (47.93%), Query Frame = 3
Query:  174 PPKQVI-GPDETESRKLLNTSLTMTAIRSKXXXXXRVRKLANARLSDRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            PPK+VI G  +T +   +           K     R  ++   + S     R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHW +RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Sbjct:   55 PPKEVINGNIKTVTEYKIEED-------GKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQSKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 282          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EIF3G_RAT (Eukaryotic translation initiation factor 3 subunit G OS=Rattus norvegicus GN=Eif3g PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.971e-26
Identity = 82/242 (33.88%), Postives = 116/242 (47.93%), Query Frame = 3
Query:  174 PPKQVI-GPDETESRKLLNTSLTMTAIRSKXXXXXRVRKLANARLSDRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFI-----------DKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            PPK+VI G  +T +   +           K     R  ++   + S     R+NW KFG++  +  G  +  T VS +  +           +E +   + L      G  ++ CR C  KGDHW +RCP+KD   P +  +           +K               G YVPP +R GA R G  M   RR +D  ++RVTNLSEDTRE DL ELFRPFG++SR+Y+A D+ TG S+GF
Sbjct:   55 PPKEVINGNIKTVTEYKVEED-------GKKFKIVRTFRIETRKASKAVARRKNWKKFGNSEFDPPGPNVATTTVSDDVSMTFITSKEDLNCQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQKELAEQLGLSTGEKEKLPGELEPVQAAQNKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF 282          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EIF3G_SCHPO (Eukaryotic translation initiation factor 3 subunit G OS=Schizosaccharomyces pombe GN=tif35 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.369e-26
Identity = 65/188 (34.57%), Postives = 100/188 (53.19%), Query Frame = 3
Query:  300 RLSDRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFIDKPXXXXXXXXXXXXTKGTYVPPGMRAGAERTGTDM---RRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            R+     ER+ W KFG    ++ G  +R T V     L  +     +K EE   A  + A++   G+ ++ CR C  KG+H+ ++CP+K +  P +                   KG Y+ P +RAG+ R   D    R R+D  ++RVTNLS+DTRE +L +LFR FG + RVY+A D++TG ++GF
Sbjct:   60 RVQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALAAAKVKAKGSSVVRCRAC--KGNHFTAQCPYKSIIGPVDEPPLDASPVSSRASGALGEKGRYIAPHLRAGSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGF 245          

HSP 2 Score: 29.6462 bits (65), Expect = 2.369e-26
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 2
Query:  182 TSDRPRRDGVKKVIEYKFNDDGNKVKI 262
            T D P  DG K +IE++ +D+G KVK+
Sbjct:   24 TFDNP--DGTKTMIEFRIDDNGKKVKV 48          
BLAST of CB611108 vs. ExPASy Swiss-Prot
Match: EI3G2_DROAN (Eukaryotic translation initiation factor 3 subunit G-2 OS=Drosophila ananassae GN=eIF3-S4-2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.722e-23
Identity = 63/195 (32.31%), Postives = 97/195 (49.74%), Query Frame = 3
Query:  276 RVRKLANARLSDRALERRNWAKFGDAVREDVG--SRLTMVSTEEILLERPRAPGSKPEETKA-AGDSLAQLGKGGAVLMVCRTCGKKGDHWASRCPFKDLAAPAETFIDKPXXXXXXXXXXXXTK-GTYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGXSRGF 848
            R  K+    +S     RR W KFGD+  +  G  S+ TM S E  +L        +  ET+  AG ++A+          CR C   G+HW+  CP+K  +  ++T ++              +K G YVPP M+ GA   G   R R+D ++VR++NLSE   E DL EL +  G  +++Y+A ++ TG  +GF
Sbjct:   50 RTFKIEKQVVSKAVARRRGWVKFGDSRLDKPGPNSQTTMASEEIFMLFMGSKEFEQTHETQMDAGKNIAK----------CRICN--GEHWSVNCPYKGTSMDSKTLMESKANAAAAAALNDPSKPGKYVPPFMKDGAGGAGGKGRERDDSSAVRISNLSESMTETDLEELVKKIGPHTKMYLAREKNTGLCKGF 232          

HSP 2 Score: 31.5722 bits (70), Expect = 1.722e-23
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  212 KKVIEYKFNDDGNKVKI 262
            K V EYKFNDDG KVK+
Sbjct:   32 KYVTEYKFNDDGKKVKV 48          
The following BLAST results are available for this feature:
BLAST of CB611108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
EI3GA_XENLA1.126e-2936.54Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_DANRE1.910e-2936.41Eukaryotic translation initiation factor 3 subunit... [more]
EI3GB_XENLA2.485e-2935.65Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_XENTR5.186e-2734.04Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_HUMAN1.155e-2633.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_BOVIN1.155e-2633.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_MOUSE1.509e-2633.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_RAT1.971e-2633.88Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_SCHPO2.369e-2634.57Eukaryotic translation initiation factor 3 subunit... [more]
EI3G2_DROAN1.722e-2332.31Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_H02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611108 ID=CB611108; Name=CB611108; organism=Citrus sinensis; type=EST; length=853bp
GGGGAAATCGCAAACCCTTAAACGCTTTGTCTCGATACCTCTCCAACGCT
TGTGATTTTCTTAATCTGATTCATTCGAAAAAGATGTCGGTTTCGACTCA
AAATCCGACCCAACCAAAGCTCCGTTGGAGCGAACTGGACGAAGAAGACG
GCGAGGATTTGGACTTCCTGCTGCCGCCTAAACAAGTGATCGGCCCCGAC
GAGACGGAGTCAAGAAAGTTATTGAATACAAGTTTAACGATGACGGCAAT
AAGGTCAAAATAACCACCACCACCGCGCGTGCGCAAGCTCGCTAACGCTC
GTCTCAGCGATCGCGCGCTGGAGAGGAGAAACTGGGCCAAGTTCGGCGAC
GCCGTTCGCGAAGACGTCGGTAGCAGACTTACCATGGTCTCCACCGAAGA
GATCTTGCTGGAACGGCCTAGGGCTCCTGGTAGCAAACCAGAAGAGACAA
AGGCTGCAGGAGATTCCTTGGCGCAACTTGGGAAAGGTGGTGCTGTTCTC
ATGGTGTGTAGGACTTGTGGTAAGAAGGGTGATCACTGGGCGTCAAGGTG
CCCTTTCAAGGATCTTGCTGCTCCAGCTGAGACATTCATTGATAAACCAG
CTGCATCAGAGACTGCAGCTGCTGCTGCTGGCGCGACCAAGGGAACATAT
GTTCCTCCTGGCATGAGAGCAGGGGCGGAGAGAACTGGAACTGATATGAG
ACGCAGGAATGATGAGAACTCTGTTAGGGTCACCAACCTATCGGAGGACA
CTCGGGAACCTGACTTGCTTGAGCTCTTCCGGCCTTTTGGTGCTGTTAGC
CGAGTTTATGTTGCTGTTGATCAGAAGACTGGCANNAGCAGAGGTTTTGG
TTT
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