CB611136

Overview
NameCB611136
Unique NameCB611136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12117 contig Csv1_Contig12117:297..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.747e-37
Identity = 68/101 (67.33%), Postives = 79/101 (78.22%), Query Frame = 2
Query:    5 YKGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 307
            Y+GH  LRTLIRC+ SP YSTGQKYIYTGS D CVY+YDLV+G QVA L +H  PVRDCSWHP  PMLVSSSWDG + RWEFPG+ +  P L + R RR++
Sbjct:  373 YRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLNHHEGPVRDCSWHPLYPMLVSSSWDGTIARWEFPGD-DQVPTLERPRARRKE 472          
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 8.299e-36
Identity = 66/99 (66.67%), Postives = 83/99 (83.84%), Query Frame = 2
Query:    5 YKGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 301
            YKGH  L TLIRC+FSP YSTGQKYIYTGSHD+ VY+YDLV+G+QV+ L+YH + VRDCSWHP+ PMLVSSS+DG++V+WE+ GN EA    N +R++R
Sbjct:  375 YKGHSVLCTLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLVTGDQVSTLQYHKATVRDCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPVQGNNQRLQR 473          
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: DCA11_PONAB (DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.680e-20
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YKGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 250
            Y+GH  L TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  431 YRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: DCA11_HUMAN (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.680e-20
Identity = 44/82 (53.66%), Postives = 58/82 (70.73%), Query Frame = 2
Query:    5 YKGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 250
            Y+GH  L TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  431 YRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: DCA11_BOVIN (DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.865e-20
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 YKGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 250
            Y+GH  L TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  431 YRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: DCA11_MOUSE (DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.742e-20
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 2
Query:    5 YKGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 250
            Y+GH  L TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  431 YRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: DCA11_RAT (DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.888e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    5 YKGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 250
            Y+GH  L TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG +  W++
Sbjct:  431 YRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGSLRLWQY 512          
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: DCA11_CAEEL (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 2
Query:    8 KGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 274
            +GH  L TL+R +FSP  STG++YIYTG     V VYD++SG     LK HT+ VR+C WHP++  +VSS+WDG   V  W+    G  AP
Sbjct:  434 RGHSVLHTLVRANFSPE-STGRRYIYTGCARGEVVVYDIMSGTVSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAP 523          
BLAST of CB611136 vs. ExPASy Swiss-Prot
Match: DCA11_CAEBR (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.055e-14
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    8 KGHPFLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 274
            +GH  L TL+R  FSP  +TG+++IYTG     + VYD+V+G     LK H + VR+C WHP +  +VS+SWDG   V  W+    G  AP
Sbjct:  413 RGHSVLHTLVRAKFSPE-NTGRRFIYTGCARGEIVVYDIVTGTVSRRLKGHQAVVRECDWHPQENEIVSTSWDGVTTVWTWDERAEGVIAP 502          
The following BLAST results are available for this feature:
BLAST of CB611136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LE14B_PRUAR5.747e-3767.33LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
LE14B_LITER8.299e-3666.67LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
DCA11_PONAB1.680e-2053.66DDB1- and CUL4-associated factor 11 OS=Pongo abeli... [more]
DCA11_HUMAN1.680e-2053.66DDB1- and CUL4-associated factor 11 OS=Homo sapien... [more]
DCA11_BOVIN2.865e-2053.66DDB1- and CUL4-associated factor 11 OS=Bos taurus ... [more]
DCA11_MOUSE3.742e-2053.66DDB1- and CUL4-associated factor 11 OS=Mus musculu... [more]
DCA11_RAT4.888e-2053.66DDB1- and CUL4-associated factor 11 OS=Rattus norv... [more]
DCA11_CAEEL1.922e-1648.35DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
DCA11_CAEBR1.055e-1443.96DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_F02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611136 ID=CB611136; Name=CB611136; organism=Citrus sinensis; type=EST; length=560bp
GGGGTATAAAGGTCATCCTTTCTTGCGTACTCTTATCCGGTGCCACTTTT
CCCCTGTATACAGCACTGGCCAAAAGTATATCTACACTGGATCCCATGAT
TCTTGTGTTTATGTTTATGACCTGGTGAGTGGTGAGCAAGTTGCTGCACT
CAAGTACCATACTTCACCCGTTAGAGACTGTAGTTGGCACCCAAGTCAAC
CAATGCTTGTTAGCTCTTCTTGGGATGGAGATGTTGTCAGGTGGGAGTTT
CCGGGTAATGGAGAAGCTGCTCCTCCTCTAAACAAGAAGAGGATCCGGAG
GAGACAGTTTTACTTGTGATGCATGCAAACTATTTATGTTATGATGTGAT
GAATAAAGACAGTTGAAAATGCTGTTAATTTATATGCTAAAATATGAGGC
TTTTTGTACTCAAAAATGACTTCCACATTTCAAAATCACAAAATGTGTTG
TAAGGTATGGTCCAATAATGTGATTATGATCACAGTATGCTGTACAGAAT
TCCTGAATAAATGTTTTAATTGTATCACTCTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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