CB611140

Overview
NameCB611140
Unique NameCB611140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB611140_ssr243 microsatellite CB611140_ssr243:243..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig415 contig Csv1_Contig415:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB611140 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.767e-37
Identity = 80/129 (62.02%), Postives = 92/129 (71.32%), Query Frame = 1 
Query:   88 AMATAGATAKRKPVFIKVDQLKPGTTGHTLTVKVVSSKPVQVNKPRGAXXXXXXXXXXXXXXIAECLVGDDTGAIYFTARNDQVDIMTPGTTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPADFEVKE 474
            A+AT  +T KRKPVF+KV+QLKPGTTGHTLTVKV+ +  V V   R                I ECL+GD+TG I FTARNDQVD+M PG TVILRN++IDMFKG+MRL VDKWGRIE T  A F VKE
Sbjct:    8 AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIV-VPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKE 135
The following BLAST results are available for this feature:
BLAST of CB611140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH3.767e-3762.02Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_D02 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611140 ID=CB611140; Name=CB611140; organism=Citrus sinensis; type=EST; length=791bp
GGGGGGTGCGCCCCCCCATTAGTCGCTGCTTCAATTCTCATTCCCTCACA
AATCCTAAACCTAGACCTAGTATTCGGGTTCTTTATTGCGATGGCGACGG
CGGGTGCGACGGCAAAGAGGAAGCCGGTCTTTATTAAGGTCGATCAGCTC
AAGCCAGGAACCACCGGCCATACGCTGACGGTCAAGGTGGTGTCGTCGAA
GCCCGTGCAGGTCAACAAGCCACGTGGCGCAAGGTCATTGTCCTCTCTCT
CTCAGCCTTCTCGACCACCTCGCATCGCCGAGTGCCTCGTCGGCGACGAC
ACCGGTGCCATCTACTTCACTGCCCGCAACGACCAAGTTGATATTATGAC
GCCGGGCACCACTGTGATTCTACGCAATGCTAAGATTGATATGTTCAAGG
GGTCAATGAGGCTAGCAGTCGACAAATGGGGACGCATTGAAGTCACCGAA
CCTGCTGACTTTGAAGTTAAAGAGAGTAACAATCTTTCTTTAGTTGAGTA
TGAGTTAGTTAATGTGGAGTGATTGGTATCATTTGGAGGTGAATATTTGT
AGGTTAGTATTTCTGGAGGTATGATTCTTCTTGTTCCCCGTCAAAACTGT
TAACTGGGATCCAGTTTTTATGGATGGTGGTACAAAGATCTTGCTGATAT
GGTTTTTCCAGCTTTGATATCAATGTGATAGACACAAGTAATTAAGTTTC
TGATTGAGTTTGAAATGGATCAGTTAATGTTATATTTTAATTACTGCTGG
GTATTGAAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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