CB611162

Overview
NameCB611162
Unique NameCB611162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4306 contig Csv1_Contig4306:546..1085. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis GN=rps11 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.583e-44
Identity = 91/104 (87.50%), Postives = 92/104 (88.46%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAVADQGMQRA+VMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_LOTJA (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus GN=rps11 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.282e-43
Identity = 88/104 (84.62%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KG+IHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR VADQGMQRA+VMIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_SOYBN (30S ribosomal protein S11, chloroplastic OS=Glycine max GN=rps11 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.187e-43
Identity = 88/104 (84.62%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRA+VMIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_GOSHI (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum GN=rps11 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.856e-43
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense GN=rps11 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.856e-43
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_CARPA (30S ribosomal protein S11, chloroplastic OS=Carica papaya GN=rps11 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.856e-43
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIRAV DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_ACOCL (30S ribosomal protein S11, chloroplastic OS=Acorus calamus GN=rps11 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.731e-43
Identity = 87/104 (83.65%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KG+IHVQASFNNTIVTVTDVRGRV+SWSSA            PFAAQTAAGNAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTVTDVRGRVVSWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_PHAVU (30S ribosomal protein S11, chloroplastic OS=Phaseolus vulgaris GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.872e-43
Identity = 85/104 (81.73%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KG+IHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRA++MIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_PHAAN (30S ribosomal protein S11, chloroplastic OS=Phaseolus angularis GN=rps11 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.872e-43
Identity = 85/104 (81.73%), Postives = 91/104 (87.50%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KG+IHVQASFNNTIVT+TDVRGRVISWSSA            PFAAQTAAGNAIR V+DQGMQRA++MIKGPGLGRDAALRAIRRSGILLNF+RDVTPMPHNGC
Sbjct:   27 KGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 130
[Close]
BLAST of CB611162 vs. ExPASy Swiss-Prot
Match: RR11_POPTR (30S ribosomal protein S11, chloroplastic OS=Populus trichocarpa GN=rps11 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.311e-43
Identity = 88/104 (84.62%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:   99 KGVIHVQASFNNTIVTVTDVRGRVISWSSAXXXXXXXXXXXXPFAAQTAAGNAIRAVADQGMQRAKVMIKGPGLGRDAALRAIRRSGILLNFVRDVTPMPHNGC 410
            KGVIHVQASFNNTIVTVTDVRGRVISWSSA            PFAAQTAAGNAIR V DQGMQRA+VMIKGPGLGRDAALRAIRRSGILL+FVRDVTPMPHNGC
Sbjct:   27 KGVIHVQASFNNTIVTVTDVRGRVISWSSAGACGFRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGC 130
The following BLAST results are available for this feature:
BLAST of CB611162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR11_CITSI2.583e-4487.5030S ribosomal protein S11, chloroplastic OS=Citrus... [more]
RR11_LOTJA1.282e-4384.6230S ribosomal protein S11, chloroplastic OS=Lotus ... [more]
RR11_SOYBN2.187e-4384.6230S ribosomal protein S11, chloroplastic OS=Glycin... [more]
RR11_GOSHI2.856e-4385.5830S ribosomal protein S11, chloroplastic OS=Gossyp... [more]
RR11_GOSBA2.856e-4385.5830S ribosomal protein S11, chloroplastic OS=Gossyp... [more]
RR11_CARPA2.856e-4385.5830S ribosomal protein S11, chloroplastic OS=Carica... [more]
RR11_ACOCL3.731e-4383.6530S ribosomal protein S11, chloroplastic OS=Acorus... [more]
RR11_PHAVU4.872e-4381.7330S ribosomal protein S11, chloroplastic OS=Phaseo... [more]
RR11_PHAAN4.872e-4381.7330S ribosomal protein S11, chloroplastic OS=Phaseo... [more]
RR11_POPTR8.311e-4384.6230S ribosomal protein S11, chloroplastic OS=Populu... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0001_IIaF_C08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0001_IIaF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB611162 ID=CB611162; Name=CB611162; organism=Citrus sinensis; type=EST; length=540bp
GGGTTATGAAATGATCAAATATGGCAAAATCTCCACCACGAAGTGGTTGA
TGTAGGCCGCGACGGATCGGTTCACGTAAAAGTGGACGTCGGATACCAAA
GGGCGTTATTCATGTTCAAGCAAGTTTCAACAACACCATTGTGACTGTTA
CAGATGTCCGGGGTCGGGTAATTTCTTGGTCCTCGGCCGGTACTTGTGGA
TTCAGGGGTACAAGAAGAGGTACGCCTTTTGCTGCTCAAACCGCAGCAGG
AAATGCTATTCGAGCAGTAGCGGATCAAGGTATGCAACGAGCAAAAGTCA
TGATAAAGGGTCCTGGTCTCGGAAGAGATGCGGCATTACGAGCTATTCGT
AGAAGCGGTATCCTTTTAAATTTCGTACGGGATGTAACCCCTATGCCACA
CAATGGTTGCAGACCCCCTAAAAAAAGACGGGTGTAGAAATAAACATTGA
AGAGATTTCAAGAGAAATAAATGACTCAATGATCTGACAAATAATATTAC
TATGGTTCAAGACAAAGTAAAAGTATCTACTCGGACACTA
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